Add simplify commands - #1
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and rename export function to reflect its scope better
- Updated the `simplify_synapse_data` function to accept a file-like object instead of a string path for the raw file, improving flexibility. - Removed the file handling for the raw file within `simplify_synapse_data`, allowing it to directly read from the provided stream. - Adjusted the `main` function to reflect the new parameter structure for `simplify_synapse_data`. - Deleted the `process_contactome.sh` script as its functionality is now integrated into the Python codebase, streamlining the processing workflow.
hannah-martinez
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May 5, 2025
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Changes look great to me, can you add examples of the new commands in the README before merging
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ooh good idea @hannah-martinez :) |
hannah-martinez
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May 6, 2025
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simplify_synapse_datafunction to accept a file-like object instead of a string path for the raw file, improving flexibility.simplify_synapse_data, allowing it to directly read from the provided stream.mainfunction to reflect the new parameter structure forsimplify_synapse_data.process_contactome.shscript as its functionality is now integrated into the Python codebase, streamlining the processing workflow.