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  1. Bioinformatics-General-Information Bioinformatics-General-Information Public

    This repository encompasses list of bioinformatics tools, and all my coding notes.

    Python

  2. prepare_UCSC_custom_track prepare_UCSC_custom_track Public

    This repository contains scripts to prepare the data to be loaded onto UCSC genome browser.

    Shell

  3. process_seqData process_seqData Public

    This repository contains scripts to sequencing data.

    Jupyter Notebook

  4. visiumHD_processing visiumHD_processing Public

    visium HD is a spatial transcriptomics method that reaches single cell resolution. It can be processed with Seurat or scanpy. From pre-processing to segmentation and downstream analysis, I will sha…

    Jupyter Notebook

  5. Zebrafish_Genome_Analysis Zebrafish_Genome_Analysis Public

    Extensive analysis of Decylmethyltransferase (DCM) binding sites enrichment in Zebrafish (Danio rerio) genome.

    Jupyter Notebook

  6. Xenium-In-Situ- Xenium-In-Situ- Public

    Xenium In Situ is an image-based Spatial Transcriptomics technology, that relies on a custom gene panel. This repo contains the main analysis I've performed on zebrafish brain slides (QC, clusterin…

    Jupyter Notebook