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Max Planck Institute of Immunobiology and Epigenetics

48 followers
Freiburg, Germany
https://www.ie-freiburg.mpg.de/

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ATACofthesnake ATACofthesnake Public

Differential accessibility, LRT tests and timecourse analyses for chromatin accessibility data

Python 5 2

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Showing 10 of 40 repositories

dissectBCL Public
demultiplexing pipeline

maxplanck-ie/dissectBCL's past year of commit activity

Python 2 2 20 1 Updated Jul 17, 2026
BigRedButton Public
1. Push button 2. Get results 3. Publish

maxplanck-ie/BigRedButton's past year of commit activity

Python 1 1 8 1 Updated Jul 17, 2026
parkour2 Public
Parkour2: Laboratory Information Management System 👩🏻‍🔬 🧬 👨🏽‍💻

maxplanck-ie/parkour2's past year of commit activity

Python 35 9 1 1 Updated Jul 17, 2026
snakepipes Public
Customizable workflows based on snakemake and python for the analysis of NGS data

maxplanck-ie/snakepipes's past year of commit activity

Python 406 91 30 2 Updated Jul 13, 2026
ATACofthesnake Public
Differential accessibility, LRT tests and timecourse analyses for chromatin accessibility data

maxplanck-ie/ATACofthesnake's past year of commit activity

Python 5 MIT 2 0 0 Updated Jul 4, 2026
nanoporeReads_dataTransfer Public
A pipeline to transfer the Nanopore reads to end users

maxplanck-ie/nanoporeReads_dataTransfer's past year of commit activity

Python 1 MIT 3 3 0 Updated Jul 2, 2026
Rintro Public
material for R-Course

maxplanck-ie/Rintro's past year of commit activity

R 5 GPL-3.0 4 2 0 Updated Mar 20, 2026
AlphaGenomeWorkshop Public
Implementation of AlphaGenome API jupyter notebook.

maxplanck-ie/AlphaGenomeWorkshop's past year of commit activity

Jupyter Notebook 0 0 0 0 Updated Feb 12, 2026
oarfish_snakemake_workflow Public Forked from katsikora/oarfish_snakemake_workflow
A snakemake workflow for standard and allele-specific DGE and DTE for ONT cDNA reads.

maxplanck-ie/oarfish_snakemake_workflow's past year of commit activity

Python 0 BSD-3-Clause 1 0 0 Updated Jan 8, 2026
chromHMM_snakemake_workflow Public Forked from katsikora/chromHMM_snakemake_workflow
A snakemake workflow to produce chromHMM segmentation on input bam files.

maxplanck-ie/chromHMM_snakemake_workflow's past year of commit activity

Python 0 1 0 0 Updated Jan 7, 2026

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