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Harden SBOLExplorer indexing and SPARQL dataset handling - #160

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cjmyers merged 2 commits into
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marpaia/sbol-db-and-explorer
Jul 31, 2026
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Harden SBOLExplorer indexing and SPARQL dataset handling#160
cjmyers merged 2 commits into
masterfrom
marpaia/sbol-db-and-explorer

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@marpaia marpaia commented Jul 30, 2026

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This PR makes SBOLExplorer indexing more deterministic and portable across SPARQL stores. Explorer initialization occurs only after the index-update functions are defined, allowing fresh deployments to build their first index reliably. Index maintenance queries operate over the endpoint’s complete dataset without sending an empty default-graph-uri, while search queries extract explicit FROM clauses independently of the SELECT projection for both result and count queries. CI now builds SBOLExplorer directly from the checked-out source and runs focused tests covering startup ordering, query transport, and dataset scoping.

@cjmyers
cjmyers merged commit 3b97c77 into master Jul 31, 2026
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cjmyers deleted the marpaia/sbol-db-and-explorer branch July 31, 2026 16:34
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