@@ -217,7 +217,7 @@ the existing databases, please let us know!
217217### * Klebsiella pneumoniae* Species Complex (KpSC) K locus databases
218218
219219The KpSC K locus reference database
220- (` Klebsiella_k_locus_primary_reference .gbk` ) comprises full-length
220+ (` Klebsiella_pneumoniae_SC_K .gbk` ) comprises full-length
221221(* galF* to * ugd* ) annotated sequences for each distinct * Klebsiella* K
222222locus, where available:
223223
@@ -271,7 +271,7 @@ Database versions:
271271 annotations with a variety of homology detection methods to provide a
272272 more accurate functional description and standardised gene nomenclature.
273273
274- Changes to the * Klebsiella * K locus primary reference database:
274+ Changes to the KpSC K locus primary reference database:
275275
276276| Locus | Change | Reason | Date of change | Kaptive version no. |
277277| ----| ----| ----| ----| ----|
@@ -280,11 +280,11 @@ Changes to the *Klebsiella* K locus primary reference database:
280280| KL37 | Removed from the database | Locus is a deletion (atr) variant of KL22 | 22 March 2024 | v 3.0.0 |
281281| All | Updated gene names and functional annotations | Database standardisation | March 2026 | v3.2.0 |
282282
283- ### * Klebsiella* O locus database
283+ ### * Klebsiella pneumoniae * Species Complex (KpSC) O locus database
284284
285285In Kaptive 3.1.0, we introduced new O-antigen nomenclature in the
286286* Klebsiella* O locus database
287- (` Klebsiella_o_locus_primary_reference .gbk` ) along wth the publication
287+ (` Klebsiella_pneumoniae_SC_O .gbk` ) along wth the publication
288288of this review: [ O-antigen polysaccharides in Klebsiella pneumoniae:
289289structures and molecular basis for antigenic
290290diversity] ( https://journals.asm.org/doi/full/10.1128/mmbr.00090-23#T1 ) .
@@ -293,9 +293,9 @@ We have also summarised the O-antigen nomenclature update on the [Wyres
293293Lab
294294website] ( http://wyreslab.com/klebsiella-pneumoniae-o-antigen-genetics-structural-diversity-and-nomenclature/ ) .
295295
296- The * Klebsiella * O locus database
297- (` Klebsiella_o_locus_primary_reference .gbk` ) contains annotated
298- sequences for 13 distinct * Klebsiella * O loci.
296+ The KpSC O locus database
297+ (` Klebsiella_pneumoniae_SC_O .gbk` ) contains annotated
298+ sequences for 13 distinct KpSC O loci.
299299
300300O locus classification requires some special logic, as the O1 and O2
301301serotypes are associated with the same loci and the distinction between
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