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Update Databases.md with new Klebs pneumo db names
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@@ -217,7 +217,7 @@ the existing databases, please let us know!
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### *Klebsiella pneumoniae* Species Complex (KpSC) K locus databases
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The KpSC K locus reference database
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(`Klebsiella_k_locus_primary_reference.gbk`) comprises full-length
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(`Klebsiella_pneumoniae_SC_K.gbk`) comprises full-length
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(*galF* to *ugd*) annotated sequences for each distinct *Klebsiella* K
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locus, where available:
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annotations with a variety of homology detection methods to provide a
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more accurate functional description and standardised gene nomenclature.
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Changes to the *Klebsiella* K locus primary reference database:
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Changes to the KpSC K locus primary reference database:
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| Locus | Change | Reason | Date of change | Kaptive version no. |
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|----|----|----|----|----|
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| KL37 | Removed from the database | Locus is a deletion (atr) variant of KL22 | 22 March 2024 | v 3.0.0 |
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| All | Updated gene names and functional annotations | Database standardisation | March 2026 | v3.2.0 |
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### *Klebsiella* O locus database
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### *Klebsiella pneumoniae* Species Complex (KpSC) O locus database
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In Kaptive 3.1.0, we introduced new O-antigen nomenclature in the
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*Klebsiella* O locus database
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(`Klebsiella_o_locus_primary_reference.gbk`) along wth the publication
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(`Klebsiella_pneumoniae_SC_O.gbk`) along wth the publication
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of this review: [O-antigen polysaccharides in Klebsiella pneumoniae:
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structures and molecular basis for antigenic
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diversity](https://journals.asm.org/doi/full/10.1128/mmbr.00090-23#T1).
@@ -293,9 +293,9 @@ We have also summarised the O-antigen nomenclature update on the [Wyres
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Lab
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website](http://wyreslab.com/klebsiella-pneumoniae-o-antigen-genetics-structural-diversity-and-nomenclature/).
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The *Klebsiella* O locus database
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(`Klebsiella_o_locus_primary_reference.gbk`) contains annotated
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sequences for 13 distinct *Klebsiella* O loci.
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The KpSC O locus database
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(`Klebsiella_pneumoniae_SC_O.gbk`) contains annotated
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sequences for 13 distinct KpSC O loci.
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O locus classification requires some special logic, as the O1 and O2
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serotypes are associated with the same loci and the distinction between

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