diff --git a/MODULE.bazel b/MODULE.bazel
index f6860655898..72e4a241a1b 100644
--- a/MODULE.bazel
+++ b/MODULE.bazel
@@ -45,6 +45,7 @@ include("//build/deps:gen/shared_deps.MODULE.bazel")
 include("//build/deps:rust.MODULE.bazel")
 include("//build/deps:nodejs.MODULE.bazel")
 include("//build/deps:python.MODULE.bazel")
+include("//build/deps:pyodide.MODULE.bazel")
 include("//build/deps:v8.MODULE.bazel")
 include("//build/deps:oci.MODULE.bazel")
 include("//build/deps/formatters:rustfmt.MODULE.bazel")
diff --git a/build/deps/dep_pyodide.bzl b/build/deps/dep_pyodide.bzl
index 010ca57be69..b95df833ec0 100644
--- a/build/deps/dep_pyodide.bzl
+++ b/build/deps/dep_pyodide.bzl
@@ -149,12 +149,3 @@ def dep_pyodide():
 
     deps += _snapshot_http_files()
     return deps
-
-def _impl(module_ctx):
-    deps = dep_pyodide()
-    return module_ctx.extension_metadata(
-        root_module_direct_deps = deps,
-        root_module_direct_dev_deps = [],
-    )
-
-pyodide = module_extension(implementation = _impl)
diff --git a/build/deps/pyodide.MODULE.bazel b/build/deps/pyodide.MODULE.bazel
new file mode 100644
index 00000000000..0c465451fc1
--- /dev/null
+++ b/build/deps/pyodide.MODULE.bazel
@@ -0,0 +1,39 @@
+# The repos below are derived from //:build/python_metadata.bzl, so this list is maintained by
+# `bazel mod tidy` rather than by hand.
+
+pyodide = use_extension("@//build/deps:pyodide.bzl", "pyodide")
+use_repo(
+    pyodide,
+    "all_pyodide_wheels_20240829.4",
+    "all_pyodide_wheels_20250808",
+    "beautifulsoup4_src_0.26.0a2",
+    "beautifulsoup4_src_0.28.2",
+    "beautifulsoup4_src_314.0.4",
+    "beautifulsoup4_src_development",
+    "fastapi_src_0.26.0a2",
+    "fastapi_src_0.28.2",
+    "numpy_src_0.28.2",
+    "numpy_src_314.0.4",
+    "numpy_src_development",
+    "pyodide-0.26.0a2",
+    "pyodide-0.28.2",
+    "pyodide-314.0.4",
+    "pyodide-snapshot-baseline-2ffc5dfa7.bin",
+    "pyodide-snapshot-baseline-4569679fb.bin",
+    "pyodide-snapshot-baseline-61eedf943.bin",
+    "pyodide-snapshot-snapshot_a6b652a95810783f5078b9a5dbd4a07c30718acb4ff724e82c25db7353dd7f2d.bin",
+    "pyodide_0.26.0a2_2024-03-01_84.capnp.bin",
+    "pyodide_0.28.2_2025-01-16_15.capnp.bin",
+    "pyodide_314.0.4_2026-06-10_15.capnp.bin",
+    "pyodide_dev.capnp.bin",
+    "pytest-asyncio_src_0.26.0a2",
+    "pytest-asyncio_src_0.28.2",
+    "pytest-asyncio_src_314.0.4",
+    "pytest-asyncio_src_development",
+    "python-workers-runtime-sdk_src_0.26.0a2",
+    "python-workers-runtime-sdk_src_0.28.2",
+    "python-workers-runtime-sdk_src_314.0.4",
+    "python-workers-runtime-sdk_src_development",
+    "scipy_src_0.26.0a2",
+    "shapely_src_0.28.2",
+)
diff --git a/build/deps/pyodide.bzl b/build/deps/pyodide.bzl
new file mode 100644
index 00000000000..9c7fb9f05af
--- /dev/null
+++ b/build/deps/pyodide.bzl
@@ -0,0 +1,12 @@
+load("@workerd//build/deps:dep_pyodide.bzl", "dep_pyodide")
+
+def _pyodide_impl(module_ctx):
+    direct_deps = dep_pyodide()
+    return module_ctx.extension_metadata(
+        root_module_direct_deps = direct_deps,
+        root_module_direct_dev_deps = [],
+    )
+
+pyodide = module_extension(
+    implementation = _pyodide_impl,
+)
diff --git a/build/deps/python.MODULE.bazel b/build/deps/python.MODULE.bazel
index fd4cb217a0e..39ccbf28e52 100644
--- a/build/deps/python.MODULE.bazel
+++ b/build/deps/python.MODULE.bazel
@@ -16,40 +16,3 @@ pip.parse(
     requirements_lock = "//build/deps:requirements.txt",
 )
 use_repo(pip, "py_deps", "v8_python_deps")
-
-pyodide = use_extension("//build/deps:dep_pyodide.bzl", "pyodide")
-use_repo(
-    pyodide,
-    "all_pyodide_wheels_20240829.4",
-    "all_pyodide_wheels_20250808",
-    "beautifulsoup4_src_0.26.0a2",
-    "beautifulsoup4_src_0.28.2",
-    "beautifulsoup4_src_314.0.4",
-    "beautifulsoup4_src_development",
-    "fastapi_src_0.26.0a2",
-    "fastapi_src_0.28.2",
-    "numpy_src_0.28.2",
-    "numpy_src_314.0.4",
-    "numpy_src_development",
-    "pyodide-0.26.0a2",
-    "pyodide-0.28.2",
-    "pyodide-314.0.4",
-    "pyodide-snapshot-baseline-2ffc5dfa7.bin",
-    "pyodide-snapshot-baseline-4569679fb.bin",
-    "pyodide-snapshot-baseline-61eedf943.bin",
-    "pyodide-snapshot-snapshot_a6b652a95810783f5078b9a5dbd4a07c30718acb4ff724e82c25db7353dd7f2d.bin",
-    "pyodide_0.26.0a2_2024-03-01_84.capnp.bin",
-    "pyodide_0.28.2_2025-01-16_15.capnp.bin",
-    "pyodide_314.0.4_2026-06-10_15.capnp.bin",
-    "pyodide_dev.capnp.bin",
-    "pytest-asyncio_src_0.26.0a2",
-    "pytest-asyncio_src_0.28.2",
-    "pytest-asyncio_src_314.0.4",
-    "pytest-asyncio_src_development",
-    "python-workers-runtime-sdk_src_0.26.0a2",
-    "python-workers-runtime-sdk_src_0.28.2",
-    "python-workers-runtime-sdk_src_314.0.4",
-    "python-workers-runtime-sdk_src_development",
-    "scipy_src_0.26.0a2",
-    "shapely_src_0.28.2",
-)