Troubleshoot CI

Author: standage

plannotate/resources.py

@@ -344,7 +344,7 @@ def download_databases():
     # db_loc = "https://github.com/barricklab/pLannotate/releases/download/v1.1.0/BLAST_dbs.tar.gz"
 
     # subprocess.call(["wget", "-P", f"{ROOT_DIR}/data/", db_loc])
-    subprocess.call(["curl", "-L", "-o", f"{ROOT_DIR}/data/BLAST_dbs.tar.gz", db_loc])
+    subprocess.call(["curl", "-L", "-o", f"{ROOT_DIR}/data/BLAST_dbs.tar.gz", db_loc], check=True)
 
     # check if download was successful
     if not os.path.exists(f"{ROOT_DIR}/data/BLAST_dbs.tar.gz"):
@@ -356,7 +356,8 @@ def download_databases():
 
     print("Extracting...")
     subprocess.call(
-        ["tar", "-xzf", f"{ROOT_DIR}/data/BLAST_dbs.tar.gz", "-C", f"{ROOT_DIR}/data/"]
+        ["tar", "-xzf", f"{ROOT_DIR}/data/BLAST_dbs.tar.gz", "-C", f"{ROOT_DIR}/data/"],
+        check=True,
     )
     print("Extraction complete.")
     print()