just fmt #46
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| name: Tests | |
| on: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12", "3.13", "3.14"] | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| channels: conda-forge,bioconda | |
| channel-priority: strict | |
| activate-environment: bactopia-py | |
| environment-file: environment.yml | |
| auto-update-conda: true | |
| conda-remove-defaults: "true" | |
| - name: Install package | |
| run: python -m pip install --no-deps -e . | |
| - name: Lint | |
| run: just check | |
| - name: Run tests | |
| run: pytest -m "not integration" --cov=bactopia --cov-report=xml | |
| - name: Upload coverage | |
| if: matrix.python-version == '3.10' | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| files: coverage.xml | |
| fail_ci_if_not_found: false |