DESCRIPTION

Package: MSstats
Title: Protein Significance Analysis in DDA, SRM and DIA for Label-free
        or Label-based Proteomics Experiments
Version: 4.21.1
Date: 2025-03-05
Description: A set of tools for statistical relative protein significance analysis in DDA, SRM and DIA experiments.
Authors@R: c(
  person("Meena", "Choi", email = "mnchoi67@gmail.com", role = c("aut", "cre")),
  person("Mateusz", "Staniak", email = "mtst@mstaniak.pl", role = "aut"),
  person("Devon", "Kohler", email = "kohler.d@northeastern.edu", role = "aut"),
  person("Tony", "Wu", email = "wu.anthon@northeastern.edu", role = "aut"),
  person("Deril", "Raju", email = "raju.d@northeastern.edu", role = "aut"),
  person("Tsung-Heng", "Tsai", email = "tsai.tsungheng@gmail.com", role = "aut"), 
  person("Ting", "Huang", email = "thuang0703@gmail.com", role = "aut"),
  person("Olga", "Vitek", email = "o.vitek@northeastern.edu", role = "aut")) 
License: Artistic-2.0
Depends: R (>= 4.0)
Imports: 
    MSstatsConvert,
    data.table,
    checkmate,
    MASS,
    htmltools,
    limma,
    lme4,
    preprocessCore,
    survival,
    utils,
    Rcpp,
    ggplot2 (>= 3.4.0),
    ggrepel,
    gplots,
    plotly,
    marray,
    stats,
    grDevices,
    graphics,
    methods,
    statmod,
    parallel,
    rlang,
    matter,
    BiocParallel
Suggests: 
    BiocStyle,
    knitr,
    rmarkdown,
    tinytest,
    covr,
    markdown,
    mockery,
    kableExtra
VignetteBuilder: knitr
biocViews: ImmunoOncology, MassSpectrometry, Proteomics, Software, Normalization,
        QualityControl, TimeCourse
LazyData: true
URL: http://msstats.org
BugReports: https://groups.google.com/forum/#!forum/msstats
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2017-10-20 02:13:12 UTC; meenachoi
LinkingTo: 
    Rcpp,
    RcppArmadillo
Config/roxygen2/version: 8.0.0