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Engine Compatibility pass / FAIL (R) pass / FAIL (L) d1 (R) d1 (L)
AMICIhttps://docs.biosimulators.org/Biosimulators_AMICI/
✅ PASSThe filenames '01186-sbml-l3v2.xml' and '01186-sbml-l3v2-sedml.xml' suggest the input files are SBML and SED-ML which is compatible with AMICI.

SED-ML and SBML are compatible with AMICI.
❌ FAILview
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logs

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

SteadyStateSimulation simulation_1 is not supported.
- Simulation simulation_1 of type SteadyStateSimulation is not supported. Simulation must be an instance of one of the following:
- UniformTimeCourseSimulation

ERROR TYPE:
CombineArchiveExecutionError
❌ FAILERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

SteadyStateSimulation simulation_1 is not supported.
- Simulation simulation_1 of type SteadyStateSimulation is not supported. Simulation must be an instance of one of the following:
- UniformTimeCourseSimulation

ERROR TYPE:
CombineArchiveExecutionError
BioNetGenhttps://docs.biosimulators.org/Biosimulators_BioNetGen/
⚠ XFAILEXPECTED FAIL

Only BNGL, SED-ML are compatible with BioNetGen.
⚠ XFAILEXPECTED FAIL

view
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logs

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

Language for model model_1 is not supported.
- Model language urn:sedml:language:sbml is not supported. Models must be in BNGL format (e.g., sed:model/@language must match ^urn:sedml:language:bngl(\.$) such as urn:sedml:language:bngl).

ERROR TYPE:
CombineArchiveExecutionError
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

Language for model model_1 is not supported.
- Model language urn:sedml:language:sbml is not supported. Models must be in BNGL format (e.g., sed:model/@language must match ^urn:sedml:language:bngl(\.$) such as urn:sedml:language:bngl).

ERROR TYPE:
CombineArchiveExecutionError
BoolNethttps://docs.biosimulators.org/Biosimulators_BoolNet/
⚠ XFAILEXPECTED FAIL

Only SBML-qual, SED-ML are compatible with BoolNet.
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

SteadyStateSimulation simulation_1 is not supported.
- Simulation simulation_1 of type SteadyStateSimulation is not supported. Simulation must be an instance of one of the following:
- UniformTimeCourseSimulation

ERROR TYPE:
CombineArchiveExecutionError
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

SteadyStateSimulation simulation_1 is not supported.
- Simulation simulation_1 of type SteadyStateSimulation is not supported. Simulation must be an instance of one of the following:
- UniformTimeCourseSimulation

ERROR TYPE:
CombineArchiveExecutionError
Brian 2https://docs.biosimulators.org/Biosimulators_pyNeuroML/
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with Brian 2.
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
CBMPyhttps://docs.biosimulators.org/Biosimulators_CBMPy/
✅ PASSThe filenames '01186-sbml-l3v2.xml' and '01186-sbml-l3v2-sedml.xml' suggest the input files are SBML and SED-ML which is compatible with CBMPy.

SED-ML and SBML are compatible with CBMPy.
❌ FAILview
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logs

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

'MLStripper' object has no attribute 'unescape'

ERROR TYPE:
CombineArchiveExecutionError
❌ FAILERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

'MLStripper' object has no attribute 'unescape'

ERROR TYPE:
CombineArchiveExecutionError
COBRApyhttps://docs.biosimulators.org/Biosimulators_COBRApy/
Only allows steady state simulations
✅ PASSThe filenames '01186-sbml-l3v2.xml' and '01186-sbml-l3v2-sedml.xml' suggest the input files are SBML and SED-ML which is compatible with COBRApy.

SED-ML and SBML are compatible with COBRApy.
❌ FAILview
download
logs

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

Something went wrong reading the SBML model. Most likely the SBML model is not valid. Please check that your model is valid using the cobra.io.sbml.validate_sbml_model function or via the online validator at http://sbml.org/validator .
(model, errors) = validate_sbml_model(filename)
If the model is valid and cannot be read please open an issue at https://github.com/opencobra/cobrapy/issues .

ERROR TYPE:
CombineArchiveExecutionError
❌ FAILERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

Something went wrong reading the SBML model. Most likely the SBML model is not valid. Please check that your model is valid using the cobra.io.sbml.validate_sbml_model function or via the online validator at http://sbml.org/validator .
(model, errors) = validate_sbml_model(filename)
If the model is valid and cannot be read please open an issue at https://github.com/opencobra/cobrapy/issues .

ERROR TYPE:
CombineArchiveExecutionError
COPASIhttps://docs.biosimulators.org/Biosimulators_COPASI/
✅ PASSThe filenames '01186-sbml-l3v2.xml' and '01186-sbml-l3v2-sedml.xml' suggest the input files are SBML and SED-ML which is compatible with COPASI.

SED-ML and SBML are compatible with COPASI.
❌ FAILview
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logs

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

class 'ValueError':No suitable equivalent for 'KISAO_0000437' could be found with the provided substitution policy

ERROR TYPE:
CombineArchiveExecutionError
❌ FAILERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

class 'ValueError':No suitable equivalent for 'KISAO_0000437' could be found with the provided substitution policy

ERROR TYPE:
CombineArchiveExecutionError
GillesPy2https://docs.biosimulators.org/Biosimulators_GillesPy2/
✅ PASSThe filenames '01186-sbml-l3v2.xml' and '01186-sbml-l3v2-sedml.xml' suggest the input files are SBML and SED-ML which is compatible with GillesPy2.

SED-ML and SBML are compatible with GillesPy2.
❌ FAILview
download
logs

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

SteadyStateSimulation simulation_1 is not supported.
- Simulation simulation_1 of type SteadyStateSimulation is not supported. Simulation must be an instance of one of the following:
- UniformTimeCourseSimulation

ERROR TYPE:
CombineArchiveExecutionError
❌ FAILERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

SteadyStateSimulation simulation_1 is not supported.
- Simulation simulation_1 of type SteadyStateSimulation is not supported. Simulation must be an instance of one of the following:
- UniformTimeCourseSimulation

ERROR TYPE:
CombineArchiveExecutionError
GINsimhttps://docs.biosimulators.org/Biosimulators_GINsim/
⚠ XFAILEXPECTED FAIL

Only SBML-qual, SED-ML are compatible with GINsim.
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

Namespaces must include 1 SBML qual namespace.

ERROR TYPE:
CombineArchiveExecutionError
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

Namespaces must include 1 SBML qual namespace.

ERROR TYPE:
CombineArchiveExecutionError
LibSBMLSimhttps://docs.biosimulators.org/Biosimulators_LibSBMLSim/
✅ PASSThe filenames '01186-sbml-l3v2.xml' and '01186-sbml-l3v2-sedml.xml' suggest the input files are SBML and SED-ML which is compatible with LibSBMLSim.

SED-ML and SBML are compatible with LibSBMLSim.
❌ FAILview
download
logs

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

SteadyStateSimulation simulation_1 is not supported.
- Simulation simulation_1 of type SteadyStateSimulation is not supported. Simulation must be an instance of one of the following:
- UniformTimeCourseSimulation

ERROR TYPE:
CombineArchiveExecutionError
❌ FAILERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

SteadyStateSimulation simulation_1 is not supported.
- Simulation simulation_1 of type SteadyStateSimulation is not supported. Simulation must be an instance of one of the following:
- UniformTimeCourseSimulation

ERROR TYPE:
CombineArchiveExecutionError
MASSpyhttps://docs.biosimulators.org/Biosimulators_MASSpy/
✅ PASSThe filenames '01186-sbml-l3v2.xml' and '01186-sbml-l3v2-sedml.xml' suggest the input files are SBML and SED-ML which is compatible with MASSpy.

SED-ML and SBML are compatible with MASSpy.
❌ FAILview
download
logs

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

SteadyStateSimulation simulation_1 is not supported.
- Simulation simulation_1 of type SteadyStateSimulation is not supported. Simulation must be an instance of one of the following:
- UniformTimeCourseSimulation

ERROR TYPE:
CombineArchiveExecutionError
❌ FAILERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

SteadyStateSimulation simulation_1 is not supported.
- Simulation simulation_1 of type SteadyStateSimulation is not supported. Simulation must be an instance of one of the following:
- UniformTimeCourseSimulation

ERROR TYPE:
CombineArchiveExecutionError
NetPyNEhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with NetPyNE.
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
NEURONhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with NEURON.
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
OpenCORhttps://docs.biosimulators.org/Biosimulators_OpenCOR/
⚠ XFAILEXPECTED FAIL

Only CellML, SED-ML are compatible with OpenCOR.
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
pyNeuroMLhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with pyNeuroML.
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
PySCeShttps://docs.biosimulators.org/Biosimulators_PySCeS/
✅ PASSThe filenames '01186-sbml-l3v2.xml' and '01186-sbml-l3v2-sedml.xml' suggest the input files are SBML and SED-ML which is compatible with PySCeS.

SED-ML and SBML are compatible with PySCeS.
❌ FAILview
download
logs

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

class 'ValueError':SteadyStateSimulation simulation_1 is not supported.
- Simulation simulation_1 of type SteadyStateSimulation is not supported. Simulation must be an instance of one of the following:
- UniformTimeCourseSimulation

ERROR TYPE:
CombineArchiveExecutionError
❌ FAILERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

class 'ValueError':SteadyStateSimulation simulation_1 is not supported.
- Simulation simulation_1 of type SteadyStateSimulation is not supported. Simulation must be an instance of one of the following:
- UniformTimeCourseSimulation

ERROR TYPE:
CombineArchiveExecutionError
RBApyhttps://docs.biosimulators.org/Biosimulators_RBApy/
⚠ XFAILEXPECTED FAIL

Only RBApy, SED-ML are compatible with RBApy.
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

Language for model model_1 is not supported.
- Model language urn:sedml:language:sbml is not supported. Models must be in RBA format (e.g., sed:model/@language must match ^urn:sedml:language:rba(\.$) such as urn:sedml:language:rba).

ERROR TYPE:
CombineArchiveExecutionError
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

Language for model model_1 is not supported.
- Model language urn:sedml:language:sbml is not supported. Models must be in RBA format (e.g., sed:model/@language must match ^urn:sedml:language:rba(\.$) such as urn:sedml:language:rba).

ERROR TYPE:
CombineArchiveExecutionError
Smoldynhttps://smoldyn.readthedocs.io/en/latest/python/api.html#sed-ml-combine-biosimulators-api
⚠ XFAILEXPECTED FAIL

Only Smoldyn, SED-ML are compatible with Smoldyn.
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
Error unknown. The log.yml containing error information was not found.
Telluriumhttps://docs.biosimulators.org/Biosimulators_tellurium/
✅ PASSThe filenames '01186-sbml-l3v2.xml' and '01186-sbml-l3v2-sedml.xml' suggest the input files are SBML and SED-ML which is compatible with Tellurium.

SED-ML and SBML are compatible with Tellurium.
❌ FAILview
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logs

ERROR MESSAGE:
flux balance analysis

ERROR TYPE:
CombineArchiveExecutionError
❌ FAILERROR MESSAGE:
flux balance analysis

ERROR TYPE:
CombineArchiveExecutionError
VCellhttps://github.com/virtualcell/vcell
✅ PASSThe filenames '01186-sbml-l3v2.xml' and '01186-sbml-l3v2-sedml.xml' suggest the input files are SBML and SED-ML which is compatible with VCell.

SED-ML, BNGL and SBML are compatible with VCell.
✅ PASSview
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logs
❌ FAILERROR MESSAGE:
Runtime Exception
XPPhttps://docs.biosimulators.org/Biosimulators_XPP/
⚠ XFAILEXPECTED FAIL

Only XPP, SED-ML are compatible with XPP.
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError