diff --git a/.github/dependabot.yml b/.github/dependabot.yml
new file mode 100644
index 0000000..60c564f
--- /dev/null
+++ b/.github/dependabot.yml
@@ -0,0 +1,17 @@
+# To get started with Dependabot version updates, you'll need to specify which
+# package ecosystems to update and where the package manifests are located.
+# Please see the documentation for all configuration options:
+# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
+
+version: 2
+updates:
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      interval: "weekly"
+      
+  - package-ecosystem: "pip"
+    directory: "/"
+    schedule:
+      interval: "weekly"
+    open-pull-requests-limit: 100
\ No newline at end of file
diff --git a/.github/workflows/code.yml b/.github/workflows/code.yml
index 2493c2f..61bc473 100644
--- a/.github/workflows/code.yml
+++ b/.github/workflows/code.yml
@@ -4,64 +4,78 @@ on: [push]
 
 jobs:
   lint:
-    runs-on: "ubuntu-latest"
+    strategy:
+      fail-fast: false
+      matrix:
+        os: ["ubuntu-latest"]
+        python: ["3.9"]
+
+    runs-on: ${{ matrix.os }}
     steps:
-      - name: Run black, flake8, mypy
-        uses: dls-controls/pipenv-run-action@v1
+      - name: Checkout Source
+        uses: actions/checkout@v3
+        with:
+          fetch-depth: 0
+
+      - name: Setup python
+        uses: actions/setup-python@v4
         with:
-          pipenv-run: lint
+          python-version: ${{ matrix.python }}
+      
+      - name: Install dependancies
+        run: |
+          python -m pip install --upgrade pip
+          pip install .[dev] -r requirements.txt
+      - name: Run black, flake8, mypy
+        run: |
+          pre-commit run --all-files --show-diff-on-failure --color=always -v
 
-  wheel:
+  sdist_wheel:
     strategy:
       fail-fast: false
       matrix:
         os: ["ubuntu-latest"]
-        python: ["3.8"]
+        python: ["3.9"]
 
     runs-on: ${{ matrix.os }}
     steps:
-      - uses: actions/checkout@v2
+      - name: Checkout Source
+        uses: actions/checkout@v3
         with:
           fetch-depth: 0
 
-      - name: Create Sdist and Wheel
+      - name: Setup python
+        uses: actions/setup-python@v4
+        with:
+          python-version: ${{ matrix.python }}
+
+      - name: Build Sdist
         # Set SOURCE_DATE_EPOCH from git commit for reproducible build
         # https://reproducible-builds.org/
         # Set group writable and umask to do the same to match inside DLS
         run: |
           chmod -R g+w .
           umask 0002
-          SOURCE_DATE_EPOCH=$(git log -1 --pretty=%ct) pipx run build --sdist --wheel
-
-      - name: Upload Wheel and Sdist as artifacts
-        uses: actions/upload-artifact@v2
+          SOURCE_DATE_EPOCH=$(git log -1 --pretty=%ct) pipx run --python $(which python${{ matrix.python }}) build --sdist --wheel
+      - name: Upload Sdist as artifact
+        uses: actions/upload-artifact@v3
         with:
           name: dist
           path: dist/*
 
-      - name: Install minimum python version
-        uses: actions/setup-python@v2
-        with:
-          python-version: ${{ matrix.python }}
-
-      - name: Install wheel in a venv and check cli works
-        # ${GITHUB_REPOSITORY##*/} is the repo name without org
-        # Replace this with the cli command if different to the repo name
-        run: pipx run --python $(which python${{ matrix.python }}) --spec dist/*.whl uvicorn --version
-
   test:
     strategy:
       fail-fast: false
       matrix:
         os: ["ubuntu-latest"] # can add windows-latest, macos-latest
-        python: ["3.8", "3.9"] # maybe add 3.10 in future
-        pipenv: ["skip-lock"]
+        python: ["3.8", "3.9", "3.10"]
+        deploy: [false]
 
         include:
           # Add an extra Python3.8 runner to use the lockfile
           - os: "ubuntu-latest"
             python: "3.8"
-            pipenv: "deploy"
+            deploy: true
 
     runs-on: ${{ matrix.os }}
     env:
@@ -69,22 +83,33 @@ jobs:
       PY_IGNORE_IMPORTMISMATCH: "1"
 
     steps:
-      - name: Setup repo and test
-        uses: dls-controls/pipenv-run-action@v1
+      - uses: actions/checkout@v3
+        with:
+          fetch-depth: 0
+
+      - name: Setup python
+        uses: actions/setup-python@v4
         with:
           python-version: ${{ matrix.python }}
-          pipenv-install: --dev --${{ matrix.pipenv }}
-          allow-editable-installs: ${{ matrix.pipenv == 'deploy' }}
-          pipenv-run: tests
+      
+      - name: Install dependencies
+        if: ${{ !matrix.deploy }}
+        run: |
+          python -m pip install --upgrade pip
+          pip install .[dev]
 
-      # - name: Upload coverage to Codecov
-      #   uses: codecov/codecov-action@v2
-      #   with:
-      #     name: ${{ matrix.python }}/${{ matrix.os }}/${{ matrix.pipenv }}
-      #     files: cov.xml
+      - name: Install dependencies (deploy)
+        if: ${{ matrix.deploy }}
+        run: |
+          python -m pip install --upgrade pip
+          pip install .[dev] -r requirements.txt
+
+      - name: Run tests with pytest
+        run: |
+          pytest
 
   release:
-    needs: [lint, wheel, test]
+    needs: [lint, sdist_wheel, test]
     runs-on: ubuntu-latest
     # upload to PyPI and make a release on every tag
     if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags')
@@ -103,3 +128,9 @@ jobs:
           generate_release_notes: true
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+
+      - name: Publish to PyPI
+        env:
+          TWINE_USERNAME: __token__
+          TWINE_PASSWORD: ${{ secrets.PYPI_TOKEN }}
+        run: pipx run twine upload dist/*
diff --git a/.github/workflows/openapi.yml b/.github/workflows/openapi.yml
index c1b48b4..6ffecdc 100644
--- a/.github/workflows/openapi.yml
+++ b/.github/workflows/openapi.yml
@@ -10,14 +10,25 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@v2
+    - name: Checkout Source
+      uses: actions/checkout@v3
+      with:
+        fetch-depth: 0
 
-    - name: Setup repo and test
-      uses: dls-controls/pipenv-run-action@v1
+    - name: Setup python
+      uses: actions/setup-python@v4
       with:
         python-version: 3.8
-        pipenv-install: --dev
-        pipenv-run: python src/diffcalc_API/openapi.py
+
+    - name: Install dependencies
+      if: ${{ !matrix.deploy }}
+      run: |
+        python -m pip install --upgrade pip
+        pip install .[dev] -r requirements.txt
+
+    - name: Make openapi.json
+      run: |
+        python src/diffcalc_API/openapi.py
 
     - name: Upload
       uses: actions/upload-artifact@v2
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 8f98aa9..efc0a17 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -13,19 +13,26 @@ repos:
         name: Run black
         stages: [commit]
         language: system
-        entry: pipenv run black --check --diff
+        entry: black --check --diff
         types: [python]
 
       - id: flake8
         name: Run flake8
         stages: [commit]
         language: system
-        entry: pipenv run flake8
+        entry: flake8
         types: [python]
 
+      - id: pydocstyle
+        name: Run pydocstyle
+        stages: [commit]
+        language: system
+        entry: pydocstyle
+        files: ^(src\/).*\.py
+
       - id: mypy
         name: Run mypy
         stages: [commit]
         language: system
-        entry: pipenv run mypy src tests
-        pass_filenames: false
+        entry: mypy
+        files: ^(src\/|tests\/).*\.py
\ No newline at end of file
diff --git a/.vscode/tasks.json b/.vscode/tasks.json
index ff78a11..dda6870 100644
--- a/.vscode/tasks.json
+++ b/.vscode/tasks.json
@@ -6,7 +6,7 @@
         {
             "type": "shell",
             "label": "Tests with coverage",
-            "command": "pipenv run tests",
+            "command": "pytest",
             "options": {
                 "cwd": "${workspaceRoot}"
             },
diff --git a/CONTRIBUTING.rst b/CONTRIBUTING.rst
index c6eb2bd..721132e 100644
--- a/CONTRIBUTING.rst
+++ b/CONTRIBUTING.rst
@@ -16,8 +16,8 @@ To get the source source code and run the unit tests, run::
 
     $ git clone git://github.com/dls-controls/diffcalc_API.git
     $ cd diffcalc_API
-    $ pipenv install --dev
-    $ pipenv run tests
+    $ pip install -e .[dev]
+    $ pytest
 
 While 100% code coverage does not make a library bug-free, it significantly
 reduces the number of easily caught bugs! Please make sure coverage remains the
@@ -36,12 +36,12 @@ The code in this repository conforms to standards set by the following tools:
 These checks will be run by pre-commit_. You can either choose to run these
 tests on all files tracked by git::
 
-    $ pipenv run lint
+    $ pre-commit run --all-files --show-diff-on-failure --color=always -v
 
 Or you can install a pre-commit hook that will run each time you do a ``git
 commit`` on just the files that have changed::
 
-    $ pipenv run pre-commit install
+    $ pre-commit install
 
 .. _black: https://github.com/psf/black
 .. _flake8: https://flake8.pycqa.org/en/latest/
@@ -88,7 +88,7 @@ Docs follow the underlining convention::
 
 You can build the docs from the project directory by running::
 
-    $ pipenv run docs
+    $ sphinx-build -EWT --keep-going docs build/html
     $ firefox build/html/index.html
 
 Release Process
diff --git a/Dockerfile b/Dockerfile
index 03e3b00..ac99dc1 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -7,10 +7,7 @@ WORKDIR ${ENV_DIR}
 COPY . ${ENV_DIR}
 
 #Install dependencies
-RUN pip install pipenv; \
-    pipenv install --system --python 3.8; \
-    pip uninstall diffcalc-core -y; \
-    pip install git+https://github.com/DiamondLightSource/diffcalc-core.git
+RUN pip install . -c requirements.txt
 
 
 #Run the API
diff --git a/Pipfile b/Pipfile
deleted file mode 100644
index 00db4e5..0000000
--- a/Pipfile
+++ /dev/null
@@ -1,17 +0,0 @@
-[[source]]
-name = "pypi"
-url = "https://pypi.org/simple"
-verify_ssl = true
-
-[dev-packages]
-diffcalc_API = {editable = true, extras = ["dev"], path = "."}
-
-[packages]
-diffcalc_API = {editable = true, path = "."}
-
-[scripts]
-lint = "pre-commit run --all-files --show-diff-on-failure --color=always -v"
-tests = "pytest"
-docs = "sphinx-build -EWT --keep-going docs build/html"
-# Delete any files that git ignore hides from us
-gitclean = "git clean -fdX"
diff --git a/Pipfile.lock b/Pipfile.lock
deleted file mode 100644
index f1b2bc9..0000000
--- a/Pipfile.lock
+++ /dev/null
@@ -1,1211 +0,0 @@
-{
-    "_meta": {
-        "hash": {
-            "sha256": "1a08e8674f6c87e6f3ecfe03bc9844ee8a4714ce907e3212d277d71cea8c5fc8"
-        },
-        "pipfile-spec": 6,
-        "requires": {},
-        "sources": [
-            {
-                "name": "pypi",
-                "url": "https://pypi.org/simple",
-                "verify_ssl": true
-            }
-        ]
-    },
-    "default": {
-        "anyio": {
-            "hashes": [
-                "sha256:413adf95f93886e442aea925f3ee43baa5a765a64a0f52c6081894f9992fdd0b",
-                "sha256:cb29b9c70620506a9a8f87a309591713446953302d7d995344d0d7c6c0c9a7be"
-            ],
-            "markers": "python_full_version >= '3.6.2'",
-            "version": "==3.6.1"
-        },
-        "click": {
-            "hashes": [
-                "sha256:7682dc8afb30297001674575ea00d1814d808d6a36af415a82bd481d37ba7b8e",
-                "sha256:bb4d8133cb15a609f44e8213d9b391b0809795062913b383c62be0ee95b1db48"
-            ],
-            "markers": "python_version >= '3.7'",
-            "version": "==8.1.3"
-        },
-        "diffcalc-api": {
-            "editable": true,
-            "path": "."
-        },
-        "diffcalc-core": {
-            "hashes": [
-                "sha256:39c7cc2699b756ba98cacab8a41a0a8c49d7b4cfffe45b5e3391a799ed91f3f9",
-                "sha256:8a0838a02d718b468a3e286a1a76a51c7cfb7f1d48b2739b5aa00867bdfb9fb6"
-            ],
-            "markers": "python_version >= '3.7'",
-            "version": "==0.4.0"
-        },
-        "fastapi": {
-            "hashes": [
-                "sha256:4e542f71b5b0f4f54a82449e8bd0244305de319186a31addab976bf672206420",
-                "sha256:5340f6016860baf94a52be5040c3a2e94c39ddc7ab4cc7548558182db742d9d6"
-            ],
-            "markers": "python_full_version >= '3.6.1'",
-            "version": "==0.80.0"
-        },
-        "h11": {
-            "hashes": [
-                "sha256:70813c1135087a248a4d38cc0e1a0181ffab2188141a93eaf567940c3957ff06",
-                "sha256:8ddd78563b633ca55346c8cd41ec0af27d3c79931828beffb46ce70a379e7442"
-            ],
-            "markers": "python_version >= '3.6'",
-            "version": "==0.13.0"
-        },
-        "idna": {
-            "hashes": [
-                "sha256:84d9dd047ffa80596e0f246e2eab0b391788b0503584e8945f2368256d2735ff",
-                "sha256:9d643ff0a55b762d5cdb124b8eaa99c66322e2157b69160bc32796e824360e6d"
-            ],
-            "markers": "python_version >= '3.5'",
-            "version": "==3.3"
-        },
-        "motor": {
-            "hashes": [
-                "sha256:3e36d29406c151b61342e6a8fa5e90c00c4723b76e30f11276a4373ea2064b7d",
-                "sha256:b076de44970f518177f0eeeda8b183f52eafa557775bfe3294e93bda18867a71"
-            ],
-            "markers": "python_version >= '3.7'",
-            "version": "==3.0.0"
-        },
-        "numpy": {
-            "hashes": [
-                "sha256:17e5226674f6ea79e14e3b91bfbc153fdf3ac13f5cc54ee7bc8fdbe820a32da0",
-                "sha256:2bd879d3ca4b6f39b7770829f73278b7c5e248c91d538aab1e506c628353e47f",
-                "sha256:4f41f5bf20d9a521f8cab3a34557cd77b6f205ab2116651f12959714494268b0",
-                "sha256:5593f67e66dea4e237f5af998d31a43e447786b2154ba1ad833676c788f37cde",
-                "sha256:5e28cd64624dc2354a349152599e55308eb6ca95a13ce6a7d5679ebff2962913",
-                "sha256:633679a472934b1c20a12ed0c9a6c9eb167fbb4cb89031939bfd03dd9dbc62b8",
-                "sha256:806970e69106556d1dd200e26647e9bee5e2b3f1814f9da104a943e8d548ca38",
-                "sha256:806cc25d5c43e240db709875e947076b2826f47c2c340a5a2f36da5bb10c58d6",
-                "sha256:8247f01c4721479e482cc2f9f7d973f3f47810cbc8c65e38fd1bbd3141cc9842",
-                "sha256:8ebf7e194b89bc66b78475bd3624d92980fca4e5bb86dda08d677d786fefc414",
-                "sha256:8ecb818231afe5f0f568c81f12ce50f2b828ff2b27487520d85eb44c71313b9e",
-                "sha256:8f9d84a24889ebb4c641a9b99e54adb8cab50972f0166a3abc14c3b93163f074",
-                "sha256:909c56c4d4341ec8315291a105169d8aae732cfb4c250fbc375a1efb7a844f8f",
-                "sha256:9b83d48e464f393d46e8dd8171687394d39bc5abfe2978896b77dc2604e8635d",
-                "sha256:ac987b35df8c2a2eab495ee206658117e9ce867acf3ccb376a19e83070e69418",
-                "sha256:b78d00e48261fbbd04aa0d7427cf78d18401ee0abd89c7559bbf422e5b1c7d01",
-                "sha256:b8b97a8a87cadcd3f94659b4ef6ec056261fa1e1c3317f4193ac231d4df70215",
-                "sha256:bd5b7ccae24e3d8501ee5563e82febc1771e73bd268eef82a1e8d2b4d556ae66",
-                "sha256:bdc02c0235b261925102b1bd586579b7158e9d0d07ecb61148a1799214a4afd5",
-                "sha256:be6b350dfbc7f708d9d853663772a9310783ea58f6035eec649fb9c4371b5389",
-                "sha256:c403c81bb8ffb1c993d0165a11493fd4bf1353d258f6997b3ee288b0a48fce77",
-                "sha256:cf8c6aed12a935abf2e290860af8e77b26a042eb7f2582ff83dc7ed5f963340c",
-                "sha256:d98addfd3c8728ee8b2c49126f3c44c703e2b005d4a95998e2167af176a9e722",
-                "sha256:dc76bca1ca98f4b122114435f83f1fcf3c0fe48e4e6f660e07996abf2f53903c",
-                "sha256:dec198619b7dbd6db58603cd256e092bcadef22a796f778bf87f8592b468441d",
-                "sha256:df28dda02c9328e122661f399f7655cdcbcf22ea42daa3650a26bce08a187450",
-                "sha256:e603ca1fb47b913942f3e660a15e55a9ebca906857edfea476ae5f0fe9b457d5",
-                "sha256:ecfdd68d334a6b97472ed032b5b37a30d8217c097acfff15e8452c710e775524"
-            ],
-            "markers": "python_version >= '3.8'",
-            "version": "==1.23.2"
-        },
-        "pydantic": {
-            "hashes": [
-                "sha256:1061c6ee6204f4f5a27133126854948e3b3d51fcc16ead2e5d04378c199b2f44",
-                "sha256:19b5686387ea0d1ea52ecc4cffb71abb21702c5e5b2ac626fd4dbaa0834aa49d",
-                "sha256:2bd446bdb7755c3a94e56d7bdfd3ee92396070efa8ef3a34fab9579fe6aa1d84",
-                "sha256:328558c9f2eed77bd8fffad3cef39dbbe3edc7044517f4625a769d45d4cf7555",
-                "sha256:32e0b4fb13ad4db4058a7c3c80e2569adbd810c25e6ca3bbd8b2a9cc2cc871d7",
-                "sha256:3ee0d69b2a5b341fc7927e92cae7ddcfd95e624dfc4870b32a85568bd65e6131",
-                "sha256:4aafd4e55e8ad5bd1b19572ea2df546ccace7945853832bb99422a79c70ce9b8",
-                "sha256:4b3946f87e5cef3ba2e7bd3a4eb5a20385fe36521d6cc1ebf3c08a6697c6cfb3",
-                "sha256:4de71c718c9756d679420c69f216776c2e977459f77e8f679a4a961dc7304a56",
-                "sha256:5565a49effe38d51882cb7bac18bda013cdb34d80ac336428e8908f0b72499b0",
-                "sha256:5803ad846cdd1ed0d97eb00292b870c29c1f03732a010e66908ff48a762f20e4",
-                "sha256:5da164119602212a3fe7e3bc08911a89db4710ae51444b4224c2382fd09ad453",
-                "sha256:615661bfc37e82ac677543704437ff737418e4ea04bef9cf11c6d27346606044",
-                "sha256:78a4d6bdfd116a559aeec9a4cfe77dda62acc6233f8b56a716edad2651023e5e",
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-                "sha256:7ead3cd020d526f75b4188e0a8d71c0dbbe1b4b6b5dc0ea775a93aca16256aeb",
-                "sha256:84d76ecc908d917f4684b354a39fd885d69dd0491be175f3465fe4b59811c001",
-                "sha256:8cb0bc509bfb71305d7a59d00163d5f9fc4530f0881ea32c74ff4f74c85f3d3d",
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-                "sha256:9c9e04a6cdb7a363d7cb3ccf0efea51e0abb48e180c0d31dca8d247967d85c6e",
-                "sha256:a8c5360a0297a713b4123608a7909e6869e1b56d0e96eb0d792c27585d40757f",
-                "sha256:afacf6d2a41ed91fc631bade88b1d319c51ab5418870802cedb590b709c5ae3c",
-                "sha256:b34ba24f3e2d0b39b43f0ca62008f7ba962cff51efa56e64ee25c4af6eed987b",
-                "sha256:bd67cb2c2d9602ad159389c29e4ca964b86fa2f35c2faef54c3eb28b4efd36c8",
-                "sha256:c0f5e142ef8217019e3eef6ae1b6b55f09a7a15972958d44fbd228214cede567",
-                "sha256:cdb4272678db803ddf94caa4f94f8672e9a46bae4a44f167095e4d06fec12979",
-                "sha256:d70916235d478404a3fa8c997b003b5f33aeac4686ac1baa767234a0f8ac2326",
-                "sha256:d8ce3fb0841763a89322ea0432f1f59a2d3feae07a63ea2c958b2315e1ae8adb",
-                "sha256:e0b214e57623a535936005797567231a12d0da0c29711eb3514bc2b3cd008d0f",
-                "sha256:e631c70c9280e3129f071635b81207cad85e6c08e253539467e4ead0e5b219aa",
-                "sha256:e78578f0c7481c850d1c969aca9a65405887003484d24f6110458fb02cca7747",
-                "sha256:f0ca86b525264daa5f6b192f216a0d1e860b7383e3da1c65a1908f9c02f42801",
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-        },
-        "zipp": {
-            "hashes": [
-                "sha256:05b45f1ee8f807d0cc928485ca40a07cb491cf092ff587c0df9cb1fd154848d2",
-                "sha256:47c40d7fe183a6f21403a199b3e4192cca5774656965b0a4988ad2f8feb5f009"
-            ],
-            "markers": "python_version >= '3.7'",
-            "version": "==3.8.1"
-        }
-    }
-}
diff --git a/docs/tutorials/installation.rst b/docs/tutorials/installation.rst
index 31c8e89..417034b 100644
--- a/docs/tutorials/installation.rst
+++ b/docs/tutorials/installation.rst
@@ -4,7 +4,7 @@ Installation
 .. note::
 
     For installation inside DLS, please see the internal documentation on
-    ``dls-python3`` and ``pipenv``. Although these instructions will work
+    ``dls-python3`` and ``pip``. Although these instructions will work
     inside DLS, they are intended for external use.
 
     If you want to contribute to the library itself, please follow
@@ -43,6 +43,8 @@ from github::
     python3 -m pip install git+git://github.com/dls-controls/diffcalc_API.git
 
 The library should now be installed and the commandline interface on your path.
-You can check the version that has been installed by typing::
+You can check diffcalc_API has been correctly installed by typing::
 
-    diffcalc_API --version
+    python -c "import diffcalc_API"
+
+If you observe any output, repeat the steps above and observe the outputs.
\ No newline at end of file
diff --git a/pyproject.toml b/pyproject.toml
index ccd70c7..d99ac1f 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -3,4 +3,4 @@
 # dls-python3, and setuptools must produce the same dist-info. Cap setuptools
 # to the last version that didn't add License-File to METADATA
 requires = ["setuptools<57", "wheel==0.33.1"]
-build-backend = "setuptools.build_meta"
+build-backend = "setuptools.build_meta"
\ No newline at end of file
diff --git a/requirements.txt b/requirements.txt
new file mode 100644
index 0000000..5875220
--- /dev/null
+++ b/requirements.txt
@@ -0,0 +1,74 @@
+alabaster==0.7.12
+anyio==3.6.1
+attrs==22.1.0
+babel==2.10.3
+black==22.3.0
+certifi==2022.6.15
+cfgv==3.3.1
+charset-normalizer==2.1.0
+click==8.1.3
+coverage==6.4.3
+git+https://github.com/DiamondLightSource/diffcalc-core.git#egg=diffcalc-core
+distlib==0.3.5
+docutils==0.17.1
+fastapi==0.79.0
+filelock==3.8.0
+flake8==3.9.2
+flake8-isort==4.2.0
+h11==0.13.0
+identify==2.5.3
+idna==3.3
+imagesize==1.4.1
+importlib-metadata==4.12.0
+iniconfig==1.1.1
+isort==5.10.1
+jinja2==3.1.2
+markupsafe==2.1.1
+mccabe==0.6.1
+mock==4.0.3
+motor==3.0.0
+mypy==0.971
+mypy-extensions==0.4.3
+nodeenv==1.7.0
+numpy==1.23.1
+packaging==21.3
+pathspec==0.9.0
+pep8-naming==0.13.1
+platformdirs==2.5.2
+pluggy==1.0.0
+pre-commit==2.20.0
+py==1.11.0
+pycodestyle==2.7.0
+pydantic==1.9.1
+pyflakes==2.3.1
+pygments==2.12.0
+pyparsing==3.0.9
+pytest==7.1.2
+pytest-cov==3.0.0
+pytz==2022.1
+pyyaml==6.0
+pymongo==4.2.0
+requests==2.28.1
+scipy==1.9.0
+setuptools==63.4.2
+sniffio==1.2.0
+snowballstemmer==2.2.0
+sphinx==5.1.1
+sphinx-rtd-theme==1.0.0
+sphinx-rtd-theme-github-versions==1.1
+sphinxcontrib-applehelp==1.0.2
+sphinxcontrib-devhelp==1.0.2
+sphinxcontrib-htmlhelp==2.0.0
+sphinxcontrib-jsmath==1.0.1
+sphinxcontrib-qthelp==1.0.3
+sphinxcontrib-serializinghtml==1.1.5
+starlette==0.19.1
+toml==0.10.2
+tomli==2.0.1
+typed-ast==1.5.4
+typing-extensions==4.3.0
+urllib3==1.26.11
+uvicorn==0.18.2
+virtualenv==20.16.3
+virtualenv-clone==0.5.7
+zipp==3.8.1
\ No newline at end of file
diff --git a/setup.cfg b/setup.cfg
index 91ea339..f1b46ff 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -29,7 +29,6 @@ install_requires =
     uvicorn
     pymongo
     motor
-    setuptools==63.4.2
 
 [options.extras_require]
 # For development tests/docs
@@ -44,10 +43,11 @@ dev =
     flake8-isort
     sphinx-rtd-theme-github-versions
     pre-commit
-    pipenv
     typed-ast
     pep8-naming
     mock
+    pydocstyle
+    mongomock
 
 [options.packages.find]
 where = src
@@ -81,7 +81,7 @@ addopts =
 # filterwarnings = error #Uncomment later.
 # Doctest python code in docs, python code in src docstrings, test functions in tests
 testpaths =
-    docs src tests
+    src tests
 
 [coverage:run]
 # This is covered in the versiongit test suite so exclude it here
diff --git a/src/diffcalc_API/__init__.py b/src/diffcalc_API/__init__.py
index 8bf36c9..c8ba73b 100644
--- a/src/diffcalc_API/__init__.py
+++ b/src/diffcalc_API/__init__.py
@@ -1,7 +1,6 @@
+"""API to expose diffcalc-core methods."""
+
 from . import config, database, openapi, server
 from ._version_git import __version__
 
-# __all__ defines the public API for the package.
-# Each module also defines its own __all__.
-
 __all__ = ["__version__", "server", "config", "database", "openapi"]
diff --git a/src/diffcalc_API/config.py b/src/diffcalc_API/config.py
index 551a464..703f972 100644
--- a/src/diffcalc_API/config.py
+++ b/src/diffcalc_API/config.py
@@ -1,3 +1,5 @@
+"""API configuration options."""
+
 import logging
 
 from pydantic import BaseSettings
@@ -15,6 +17,12 @@
 
 
 class Settings(BaseSettings):
+    """Class which gets environment variables.
+
+    Environment variables set to the attributes of this class are automatically
+    set to the values of these attributes, and used in the application.
+    """
+
     mongo_url: str = "localhost:27017"
     api_version = version
     logging_level: str = "WARN"
diff --git a/src/diffcalc_API/database.py b/src/diffcalc_API/database.py
index a314481..bd95e7a 100644
--- a/src/diffcalc_API/database.py
+++ b/src/diffcalc_API/database.py
@@ -1,3 +1,5 @@
+"""Mongo database configuration options."""
+
 import motor.motor_asyncio
 from motor.motor_asyncio import AsyncIOMotorClient, AsyncIOMotorDatabase
 
diff --git a/src/diffcalc_API/errors/__init__.py b/src/diffcalc_API/errors/__init__.py
index 92906ae..c64b1d5 100644
--- a/src/diffcalc_API/errors/__init__.py
+++ b/src/diffcalc_API/errors/__init__.py
@@ -1,3 +1,10 @@
+"""
+Defines all errors that can be raised when accessing almost all endpoints.
+
+Because some errors arise from persistence retrieval, those are defined in
+structures within diffcalc_API.stores instead.
+"""
+
 from diffcalc_API.errors import constraints, hkl, ub
 
 __all__ = ["hkl", "ub", "constraints"]
diff --git a/src/diffcalc_API/errors/constraints.py b/src/diffcalc_API/errors/constraints.py
index 9ca1867..b5f6265 100644
--- a/src/diffcalc_API/errors/constraints.py
+++ b/src/diffcalc_API/errors/constraints.py
@@ -1,3 +1,4 @@
+"""Errors that can be raised when accessing constraints endpoints."""
 import numpy as np
 
 from diffcalc_API.config import ALL_CONSTRAINTS
@@ -9,6 +10,8 @@
 
 
 class ErrorCodes(ErrorCodesBase):
+    """All error codes which constraints routes can raise."""
+
     INVALID_CONSTRAINT = 400
 
 
@@ -16,7 +19,10 @@ class ErrorCodes(ErrorCodesBase):
 
 
 class InvalidConstraintError(DiffcalcAPIException):
+    """Error that gets thrown when the provided constraint is invalid."""
+
     def __init__(self, constraint: str):
+        """Set detail and status code."""
         self.detail = (
             f"property {constraint} does not exist as a valid constraint."
             f" Valid constraints are: {ALL_CONSTRAINTS}"
diff --git a/src/diffcalc_API/errors/definitions.py b/src/diffcalc_API/errors/definitions.py
index 20f68f6..66c4f7b 100644
--- a/src/diffcalc_API/errors/definitions.py
+++ b/src/diffcalc_API/errors/definitions.py
@@ -1,3 +1,5 @@
+"""Errors used throughout the package and for documentation."""
+
 from enum import IntEnum
 from typing import Any, Dict, List, Union
 
@@ -9,19 +11,27 @@
 
 
 class DiffcalcAPIException(Exception):
+    """Error when there is an issue with the request."""
+
     def __init__(self, status_code: int, detail: str):
+        """Set status code and detail."""
         self.status_code = status_code
         self.detail = detail
 
 
 class DiffcalcExceptionModel(BaseModel):
+    """Error when there is an issue with diffcalc-core's execution of the request."""
+
     status_code: int
     detail: str
 
 
 class ErrorCodesBase(IntEnum):
+    """Base class to store multiple error codes for documentation/testing purposes."""
+
     @classmethod
     def all_codes(cls) -> List[int]:
+        """Generate a list of all the code values for documentation purposes."""
         return [val.value for val in cls]
 
 
diff --git a/src/diffcalc_API/errors/hkl.py b/src/diffcalc_API/errors/hkl.py
index 2b6d134..04f42f0 100644
--- a/src/diffcalc_API/errors/hkl.py
+++ b/src/diffcalc_API/errors/hkl.py
@@ -1,3 +1,4 @@
+"""Errors that can be raised when accessing /hkl/ endpoints."""
 from typing import Optional
 
 import numpy as np
@@ -10,6 +11,8 @@
 
 
 class ErrorCodes(ErrorCodesBase):
+    """All error codes which hkl routes can raise."""
+
     INVALID_MILLER_INDICES = 400
     INVALID_SCAN_BOUNDS = 400
     INVALID_SOLUTION_BOUNDS = 400
@@ -19,7 +22,10 @@ class ErrorCodes(ErrorCodesBase):
 
 
 class InvalidMillerIndicesError(DiffcalcAPIException):
+    """Error that gets thrown when provided miller indices are invalid."""
+
     def __init__(self, detail: Optional[str] = None) -> None:
+        """Set detail and status code."""
         self.detail = (
             "At least one of the hkl indices must be non-zero" if not detail else detail
         )
@@ -27,7 +33,10 @@ def __init__(self, detail: Optional[str] = None) -> None:
 
 
 class InvalidScanBoundsError(DiffcalcAPIException):
+    """Error that gets thrown when provided scan bounds are invalid."""
+
     def __init__(self, start: float, stop: float, inc: float) -> None:
+        """Set detail and status code."""
         self.detail = (
             f"numpy range cannot be formed from start: {start}"
             f" to stop: {stop} in increments of: {inc}"
@@ -36,6 +45,14 @@ def __init__(self, start: float, stop: float, inc: float) -> None:
 
 
 class InvalidSolutionBoundsError(DiffcalcAPIException):
+    """Error that gets thrown when provided solution bounds are invalid.
+
+    The diffraction angle calculator often provides multiple diffractometer
+    angles as equivalent to a set of miller indices. Solution bounds can be provided
+    to constrain these, however they must pass some checks before use.
+    """
+
     def __init__(self, detail: str) -> None:
+        """Set detail and status code."""
         self.detail = detail
         self.status_code = ErrorCodes.INVALID_SOLUTION_BOUNDS
diff --git a/src/diffcalc_API/errors/ub.py b/src/diffcalc_API/errors/ub.py
index 92f9d0e..5d17068 100644
--- a/src/diffcalc_API/errors/ub.py
+++ b/src/diffcalc_API/errors/ub.py
@@ -1,3 +1,5 @@
+"""Defines all errors that can be raised when accessing ub endpoints."""
+
 from typing import Optional, Union
 
 import numpy as np
@@ -11,6 +13,8 @@
 
 
 class ErrorCodes(ErrorCodesBase):
+    """All error codes which ub routes can raise."""
+
     INVALID_SET_LATTICE_PARAMS = 400
     REFERENCE_RETRIEVAL_ERROR = 403
     INVALID_PROPERTY = 400
@@ -22,7 +26,14 @@ class ErrorCodes(ErrorCodesBase):
 
 
 class NoTagOrIdxProvidedError(DiffcalcAPIException):
+    """Error that gets thrown when neither a tag or index are provided.
+
+    Some ub routes require editing existing objects handled by a tag or index. If
+    neither of these are provided, the API doesn't know which object to modify.
+    """
+
     def __init__(self):
+        """Set detail and status code."""
         self.detail = (
             "One of the following must be provided as a query parameter:"
             + " tag (string), index (integer)"
@@ -31,7 +42,14 @@ def __init__(self):
 
 
 class BothTagAndIdxProvidedError(DiffcalcAPIException):
+    """Error that gets thrown when both a tag and index are provided.
+
+    Some ub routes require editing existing objects handled by a tag or index. If
+    both of these are provided, the API doesn't know which to choose to modify.
+    """
+
     def __init__(self):
+        """Set detail and status code."""
         self.detail = (
             "both the tag and index have been provided. These are identifiers"
             + " for a specific orientation or reflection, and so both cannot be"
@@ -41,18 +59,35 @@ def __init__(self):
 
 
 class InvalidSetLatticeParamsError(DiffcalcAPIException):
+    """Error that gets thrown if the request body is empty.
+
+    All parameters in the request body to the endpoint which sets the lattice are
+    completely optional by definition. However in practise at least some parameters
+    should be provided.
+    """
+
     def __init__(self):
+        """Set detail and status code."""
         self.detail = ("please provide lattice parameters in request body",)
         self.status_code = ErrorCodes.INVALID_SET_LATTICE_PARAMS
 
 
 class ReferenceRetrievalError(DiffcalcAPIException):
+    """Error that gets thrown if a reflection or orientation cannot be retrieved.
+
+    Commonly caused by an issue with the tag or index provided.
+    """
+
     def __init__(self, handle: Optional[Union[str, int]], reference_type: str) -> None:
+        """Set detail and status code."""
         self.detail = f"cannot retrieve {reference_type} with tag or index {handle}"
         self.status_code = ErrorCodes.REFERENCE_RETRIEVAL_ERROR
 
 
 class InvalidPropertyError(DiffcalcAPIException):
+    """Error that gets thrown if attempting to modify a non-existing property."""
+
     def __init__(self):
+        """Set detail and status code."""
         self.detail = f"invalid property. Choose one of: {VECTOR_PROPERTIES}"
         self.status_code = ErrorCodes.INVALID_PROPERTY
diff --git a/src/diffcalc_API/examples/__init__.py b/src/diffcalc_API/examples/__init__.py
index 603a2eb..de30da2 100644
--- a/src/diffcalc_API/examples/__init__.py
+++ b/src/diffcalc_API/examples/__init__.py
@@ -1,3 +1,5 @@
+"""Examples to use in endpoints for fastAPI docs, to make it easier to read."""
+
 from diffcalc_API.examples import ub
 
 __all__ = ["ub"]
diff --git a/src/diffcalc_API/examples/ub.py b/src/diffcalc_API/examples/ub.py
index f5c4d8a..1ce6407 100644
--- a/src/diffcalc_API/examples/ub.py
+++ b/src/diffcalc_API/examples/ub.py
@@ -1,3 +1,6 @@
+"""API examples used in diffcalc_API.routes.ub."""
+
+
 from diffcalc_API.models.ub import (
     AddOrientationParams,
     AddReflectionParams,
diff --git a/src/diffcalc_API/models/__init__.py b/src/diffcalc_API/models/__init__.py
index 1a46719..a56b8b8 100644
--- a/src/diffcalc_API/models/__init__.py
+++ b/src/diffcalc_API/models/__init__.py
@@ -1,3 +1,12 @@
+"""Defines all pydantic models used for endpoint requests and responses.
+
+Ub and Hkl endpoints have specific pydantic models for their request bodies, defined in
+modules diffcalc_API.models.ub and diffcalc_API.models.hkl respectively.
+
+Module diffcalc_API.models.response defines general endpoint response models used by
+all routes.
+"""
+
 from diffcalc_API.models import hkl, response, ub
 
 __all__ = ["ub", "hkl", "response"]
diff --git a/src/diffcalc_API/models/hkl.py b/src/diffcalc_API/models/hkl.py
index f6cc1c6..ef3a199 100644
--- a/src/diffcalc_API/models/hkl.py
+++ b/src/diffcalc_API/models/hkl.py
@@ -1,3 +1,5 @@
+"""Defines pydantic models relating to hkl endpoints."""
+
 from dataclasses import dataclass
 from typing import Iterator, List, Optional, Union
 
@@ -6,6 +8,17 @@
 
 @dataclass
 class SolutionConstraints:
+    """Class to store solution constraints.
+
+    The diffraction angle calculator often provides multiple diffractometer
+    angles as equivalent to a set of miller indices. Solution bounds can be provided
+    to constrain these, however they must pass some checks before use.
+
+    Solutions are constrained by diffractometer angles, or axes. A high bound and low
+    bound must be given for each provided. All three of these conditions must contain
+    the same number of elements to be valid.
+    """
+
     axes: Optional[List[str]] = None
     low_bound: Optional[List[float]] = None
     high_bound: Optional[List[float]] = None
@@ -13,9 +26,14 @@ class SolutionConstraints:
     msg: str = ""
 
     def __post_init__(self):
+        """Immediately upon initialisation, evaluate validity of bounds."""
         self.invalid_bounds()
 
     def invalid_bounds(self) -> None:
+        """Compute if the inputes are valid.
+
+        If not, sets self.valid to False.
+        """
         axes, low_bound, high_bound = self.axes, self.low_bound, self.high_bound
         msg = self.msg
 
diff --git a/src/diffcalc_API/models/response.py b/src/diffcalc_API/models/response.py
index cabc60c..9ba0da0 100644
--- a/src/diffcalc_API/models/response.py
+++ b/src/diffcalc_API/models/response.py
@@ -1,3 +1,4 @@
+"""Pydantic models relating to all endpoint responses."""
 from typing import Dict, List
 
 from pydantic import BaseModel
@@ -6,24 +7,50 @@
 
 
 class InfoResponse(BaseModel):
+    """Used for all HTTP requests that simply change persisted state."""
+
     message: str
 
 
 class StringResponse(BaseModel):
+    """Used for some HTTP get requests.
+
+    InfoResponse models should only be returned to inform the client that
+    a persisted state has changed. The StringResponse model however addresses
+    the case where a HTTP get request needs to return a string. The distinction
+    is minor but important.
+    """
+
     payload: str
 
 
 class ArrayResponse(BaseModel):
+    """Used for UB calculation retrieval."""
+
     payload: List[List[float]]
 
 
 class ScanResponse(BaseModel):
+    """Used for all scans in hkl endpoints."""
+
     payload: Dict[str, List[Dict[str, float]]]
 
 
 class DiffractorAnglesResponse(BaseModel):
+    """Diffractor Angles Response.
+
+    Used for any endpoint with an attached service that returns a set of diffractor
+    angles.
+    """
+
     payload: List[Dict[str, float]]
 
 
 class MillerIndicesResponse(BaseModel):
+    """Miller Indices Response.
+
+    Used for any endpoint with an attached service that returns a set of miller
+    indices.
+    """
+
     payload: HklModel
diff --git a/src/diffcalc_API/models/ub.py b/src/diffcalc_API/models/ub.py
index 7fbb842..f678ae7 100644
--- a/src/diffcalc_API/models/ub.py
+++ b/src/diffcalc_API/models/ub.py
@@ -1,21 +1,29 @@
+"""Pydantic models relating to ub routes."""
+
 from typing import Optional
 
 from pydantic import BaseModel
 
 
 class HklModel(BaseModel):
+    """Model containing miller indices."""
+
     h: float
     k: float
     l: float
 
 
 class XyzModel(BaseModel):
+    """Model containing real space positions."""
+
     x: float
     y: float
     z: float
 
 
 class PositionModel(BaseModel):
+    """Model containing diffractometer angles."""
+
     mu: float
     delta: float
     nu: float
@@ -25,6 +33,8 @@ class PositionModel(BaseModel):
 
 
 class SetLatticeParams(BaseModel):
+    """Request body definition to set the lattice."""
+
     name: Optional[str] = None
     system: Optional[str] = None
     a: Optional[float] = None
@@ -36,18 +46,24 @@ class SetLatticeParams(BaseModel):
 
 
 class AddReflectionParams(BaseModel):
+    """Request body definition to add a reflection of the UB calculation."""
+
     hkl: HklModel
     position: PositionModel
     energy: float
 
 
 class AddOrientationParams(BaseModel):
+    """Request body definition to add an orientation of the UB calculation."""
+
     hkl: HklModel
     xyz: XyzModel
     position: Optional[PositionModel] = None
 
 
 class EditReflectionParams(BaseModel):
+    """Request body definition to edit a reflection of the UB calculation."""
+
     hkl: Optional[HklModel] = None
     position: Optional[PositionModel] = None
     energy: Optional[float] = None
@@ -55,11 +71,17 @@ class EditReflectionParams(BaseModel):
 
 
 class EditOrientationParams(BaseModel):
+    """Request body definition to edit an orientation of the UB calculation."""
+
     hkl: Optional[HklModel] = None
     xyz: Optional[XyzModel] = None
     position: Optional[PositionModel] = None
     set_tag: Optional[str] = None
 
 
-def select_idx_or_tag_str(idx: Optional[int], tag: Optional[str]):
+def select_idx_or_tag_str(idx: Optional[int], tag: Optional[str]) -> str:
+    """Select an index or tag, and generate a string from it.
+
+    Return a string for diffcalc_API.models.response.InfoResponse endpoint responses.
+    """
     return f"index {idx}" if idx is not None else f"tag {tag}"
diff --git a/src/diffcalc_API/openapi.py b/src/diffcalc_API/openapi.py
index c83b6e0..cc4f5a5 100644
--- a/src/diffcalc_API/openapi.py
+++ b/src/diffcalc_API/openapi.py
@@ -1,3 +1,5 @@
+"""Generate openapi.json."""
+
 import json
 
 from fastapi.openapi.utils import get_openapi
diff --git a/src/diffcalc_API/routes/__init__.py b/src/diffcalc_API/routes/__init__.py
index 9f64f11..da7ab89 100644
--- a/src/diffcalc_API/routes/__init__.py
+++ b/src/diffcalc_API/routes/__init__.py
@@ -1,3 +1,5 @@
+"""Defines all endpoints for the API."""
+
 from diffcalc_API.routes import constraints, hkl, ub
 
 __all__ = ["ub", "hkl", "constraints"]
diff --git a/src/diffcalc_API/routes/constraints.py b/src/diffcalc_API/routes/constraints.py
index 96e1c08..e97cb7b 100644
--- a/src/diffcalc_API/routes/constraints.py
+++ b/src/diffcalc_API/routes/constraints.py
@@ -1,3 +1,5 @@
+"""Endpoints relating to the management of constraints."""
+
 from typing import Dict, Optional
 
 from fastapi import APIRouter, Body, Depends, Query
@@ -15,6 +17,16 @@ async def get_constraints(
     store: HklCalcStore = Depends(get_store),
     collection: Optional[str] = Query(default=None, example="B07"),
 ):
+    """Get the status of the constraints object in the given hkl object.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        store: accessor to the hkl object
+        collection: collection within which the hkl object resides
+
+    Returns:
+        StringResponse with the state of the contsraints object.
+    """
     content = await service.get_constraints(name, store, collection)
     return StringResponse(payload=content)
 
@@ -26,6 +38,15 @@ async def set_constraints(
     store: HklCalcStore = Depends(get_store),
     collection: Optional[str] = Query(default=None, example="B07"),
 ):
+    """Set the constraints in the constraints object in the given hkl object.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        constraints: dictionary with the constraints to set
+        store: accessor to the hkl object
+        collection: collection within which the hkl object resides
+
+    """
     await service.set_constraints(name, constraints, store, collection)
     return InfoResponse(
         message=(
@@ -42,6 +63,15 @@ async def remove_constraint(
     store: HklCalcStore = Depends(get_store),
     collection: Optional[str] = Query(default=None, example="B07"),
 ):
+    """Remove a constraint in the constraints object in the given hkl object.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        property: the constraint to remove
+        store: accessor to the hkl object
+        collection: collection within which the hkl object resides
+
+    """
     await service.remove_constraint(name, property, store, collection)
 
     return InfoResponse(
@@ -60,6 +90,16 @@ async def set_constraint(
     store: HklCalcStore = Depends(get_store),
     collection: Optional[str] = Query(default=None, example="B07"),
 ):
+    """Set a constraint in the constraints object in the given hkl object.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        property: the constraint to set
+        value: the value of the constraint to set to
+        store: accessor to the hkl object
+        collection: collection within which the hkl object resides
+
+    """
     await service.set_constraint(name, property, value, store, collection)
 
     return InfoResponse(
diff --git a/src/diffcalc_API/routes/hkl.py b/src/diffcalc_API/routes/hkl.py
index 466ba73..da5cffa 100644
--- a/src/diffcalc_API/routes/hkl.py
+++ b/src/diffcalc_API/routes/hkl.py
@@ -1,3 +1,5 @@
+"""Endpoints relating to calculating positions using constraints and the UB matrix."""
+
 from typing import List, Optional
 
 from fastapi import APIRouter, Depends, Query
@@ -27,6 +29,26 @@ async def calculate_ub(
     store: HklCalcStore = Depends(get_store),
     collection: Optional[str] = Query(default=None, example="B07"),
 ):
+    """Calculate the UB matrix.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        store: accessor to the hkl object.
+        collection: collection within which the hkl object resides.
+        tag1: the tag of the first reference object.
+        idx1: the index of the first reference object.
+        tag2: the tag of the second reference object.
+        idx2: the index of the second reference object.
+
+    For each reference object, only a tag or index needs to be given. If none are
+    provided, diffcalc-core tries to work it out from the available reference
+    objects.
+
+    Returns:
+        ArrayResponse object containing a list of angles, combined together into one
+        dictionary.
+
+    """
     content = await service.calculate_ub(
         name, store, collection, tag1, idx1, tag2, idx2
     )
@@ -44,6 +66,22 @@ async def lab_position_from_miller_indices(
     store: HklCalcStore = Depends(get_store),
     collection: Optional[str] = Query(default=None, example="B07"),
 ):
+    """Convert miller indices to a list of diffractometer positions.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        miller_indices: miller indices to be converted
+        wavelength: wavelength of light used in the experiment
+        axes: angles to constrain the solutions by
+        low_bounds: minimum values of constrained axes
+        high_bound: maximum values of constrained axes
+        store: accessor to the hkl object
+        collection: collection within which the hkl object resides
+
+    Returns:
+        DiffractorAnglesResponse containing a list of all possible diffractometer
+        positions.
+    """
     solution_constraints = SolutionConstraints(axes, low_bound, high_bound)
     if not solution_constraints.valid:
         raise InvalidSolutionBoundsError(solution_constraints.msg)
@@ -67,6 +105,18 @@ async def miller_indices_from_lab_position(
     store: HklCalcStore = Depends(get_store),
     collection: Optional[str] = Query(default=None, example="B07"),
 ):
+    """Convert a diffractometer position to a set of miller indices.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        pos: object containing diffractometer position to be converted.
+        wavelength: wavelength of light used in the experiment
+        store: accessor to the hkl object.
+        collection: collection within which the hkl object resides.
+
+    Returns:
+        MillerIndicesResponse containing the miller indices.
+    """
     hkl = await service.miller_indices_from_lab_position(
         name, pos, wavelength, store, collection
     )
@@ -86,6 +136,24 @@ async def scan_hkl(
     store: HklCalcStore = Depends(get_store),
     collection: Optional[str] = Query(default=None, example="B07"),
 ):
+    """Retrieve possible diffractometer positions for a range of miller indices.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        start: miller indices to start at
+        stop: miller indices to stop at
+        inc: miller indices to increment by
+        wavelength: wavelength of light used in the experiment
+        axes: angles to constrain the solutions by
+        low_bounds: minimum values of constrained axes
+        high_bound: maximum values of constrained axes
+        store: accessor to the hkl object.
+        collection: collection within which the hkl object resides.
+
+    Returns:
+        ScanResponse containing a dictionary of each set of miller indices and their
+        possible diffractometer positions.
+    """
     solution_constraints = SolutionConstraints(axes, low_bound, high_bound)
     if not solution_constraints.valid:
         raise InvalidSolutionBoundsError(solution_constraints.msg)
@@ -116,6 +184,24 @@ async def scan_wavelength(
     store: HklCalcStore = Depends(get_store),
     collection: Optional[str] = Query(default=None, example="B07"),
 ):
+    """Retrieve possible diffractometer positions for a range of wavelengths.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        start: wavelength to start at
+        stop: wavelength to stop at
+        inc: wavelength to increment by
+        hkl: desired miller indices to use for the experiment
+        axes: angles to constrain the solutions by
+        low_bounds: minimum values of constrained axes
+        high_bound: maximum values of constrained axes
+        store: accessor to the hkl object.
+        collection: collection within which the hkl object resides.
+
+    Returns:
+        ScanResponse containing a dictionary of each wavelength and the corresponding
+        possible diffractometer positions.
+    """
     solution_constraints = SolutionConstraints(axes, low_bound, high_bound)
     if not solution_constraints.valid:
         raise InvalidSolutionBoundsError(solution_constraints.msg)
@@ -141,6 +227,26 @@ async def scan_constraint(
     store: HklCalcStore = Depends(get_store),
     collection: Optional[str] = Query(default=None, example="B07"),
 ):
+    """Retrieve possible diffractometer positions while scanning across a constraint.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        constraint: the name of the constraint to use.
+        start: constraint to start at
+        stop: constraint to stop at
+        inc: constraint to increment by
+        hkl: desired miller indices to use for the experiment
+        wavelength: wavelength of light used in the experiment
+        axes: angles to constrain the solutions by
+        low_bounds: minimum values of constrained axes
+        high_bound: maximum values of constrained axes
+        store: accessor to the hkl object.
+        collection: collection within which the hkl object resides.
+
+    Returns:
+        ScanResponse containing a dictionary of each constraint value and the
+        corresponding possible diffractometer positions.
+    """
     solution_constraints = SolutionConstraints(axes, low_bound, high_bound)
     if not solution_constraints.valid:
         raise InvalidSolutionBoundsError(solution_constraints.msg)
diff --git a/src/diffcalc_API/routes/ub.py b/src/diffcalc_API/routes/ub.py
index f8f9118..76bc33e 100644
--- a/src/diffcalc_API/routes/ub.py
+++ b/src/diffcalc_API/routes/ub.py
@@ -1,3 +1,5 @@
+"""Endpoints relating to the management of setting up the UB calculation."""
+
 from typing import Optional
 
 from fastapi import APIRouter, Body, Depends, Query
@@ -32,6 +34,16 @@ async def get_ub(
     store: HklCalcStore = Depends(get_store),
     collection: Optional[str] = Query(default=None, example="B07"),
 ):
+    """Get the status of the UB object in the hkl object.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        store: accessor to the hkl object
+        collection: collection within which the hkl object resides
+
+    Returns:
+        a string with the current state of the UB object
+    """
     content = await service.get_ub(name, store, collection)
     return StringResponse(payload=content)
 
@@ -44,6 +56,16 @@ async def add_reflection(
     collection: Optional[str] = Query(default=None, example="B07"),
     tag: Optional[str] = Query(default=None, example="refl1"),
 ):
+    """Add reflection to the UB object in the hkl object.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        params: detail about the reflection object to be added
+        store: accessor to the hkl object
+        collection: collection within which the hkl object resides
+        tag: optional tag to attribute to the new reflection
+
+    """
     await service.add_reflection(name, params, store, collection, tag)
     return InfoResponse(
         message=(
@@ -62,6 +84,18 @@ async def edit_reflection(
     tag: Optional[str] = Query(default=None, example="refl1"),
     idx: Optional[int] = Query(default=None),
 ):
+    """Modify reflection in the UB object in the hkl object.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        params: detail describing what the reflection should be edited to
+        store: accessor to the hkl object
+        collection: collection within which the hkl object resides
+        tag: optional tag to retrieve the reflection by
+        idx: optional index to retrieve the reflection by
+
+    Exactly one tag or index must be provided.
+    """
     if (tag is None) and (idx is None):
         raise NoTagOrIdxProvidedError()
 
@@ -85,6 +119,17 @@ async def delete_reflection(
     tag: Optional[str] = Query(default=None, example="refl1"),
     idx: Optional[int] = Query(default=None),
 ):
+    """Delete reflection in the UB object in the hkl object.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        store: accessor to the hkl object
+        collection: collection within which the hkl object resides
+        tag: optional tag to retrieve the reflection by
+        idx: optional index to retrieve the reflection by
+
+    Exactly one tag or index must be provided.
+    """
     if (idx is None) and (tag is None):
         raise NoTagOrIdxProvidedError()
     if (idx is not None) and (tag is not None):
@@ -107,6 +152,16 @@ async def add_orientation(
     collection: Optional[str] = Query(default=None, example="B07"),
     tag: Optional[str] = Query(default=None, example="plane"),
 ):
+    """Add orientation to the UB object in the hkl object.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        params: detail about the orientation object to be added
+        store: accessor to the hkl object
+        collection: collection within which the hkl object resides
+        tag: optional tag to attribute to the new orientation
+
+    """
     await service.add_orientation(name, params, store, collection, tag)
     return InfoResponse(
         message=(
@@ -125,6 +180,18 @@ async def edit_orientation(
     tag: Optional[str] = Query(default=None),
     idx: Optional[int] = Query(default=None, example=0),
 ):
+    """Modify orientation in the UB object in the hkl object.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        params: detail describing what the orientation should be edited to
+        store: accessor to the hkl object
+        collection: collection within which the hkl object resides
+        tag: optional tag to retrieve the orientation by
+        idx: optional index to retrieve the orientation by
+
+    Exactly one tag or index must be provided.
+    """
     if (idx is None) and (tag is None):
         raise NoTagOrIdxProvidedError()
     if (idx is not None) and (tag is not None):
@@ -147,6 +214,17 @@ async def delete_orientation(
     tag: Optional[str] = Query(default=None, example="plane"),
     idx: Optional[int] = Query(default=None),
 ):
+    """Delete orientation in the UB object in a given hkl object.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        store: accessor to the hkl object
+        collection: collection within which the hkl object resides
+        tag: optional tag to retrieve the orientation by
+        idx: optional index to retrieve the orientation by
+
+    Exactly one tag or index must be provided.
+    """
     if (idx is None) and (tag is None):
         raise NoTagOrIdxProvidedError()
     if (idx is not None) and (tag is not None):
@@ -168,6 +246,15 @@ async def set_lattice(
     store: HklCalcStore = Depends(get_store),
     collection: Optional[str] = Query(default=None, example="B07"),
 ):
+    """Set the Crystal parameters in the UB object in a given hkl object.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        params: the parameters to use to set the lattice
+        store: accessor to the hkl object
+        collection: collection within which the hkl object resides
+
+    """
     non_empty_vars = [var for var, value in params if value is not None]
 
     if len(non_empty_vars) == 0:
@@ -190,6 +277,17 @@ async def modify_property(
     store: HklCalcStore = Depends(get_store),
     collection: Optional[str] = Query(default=None, example="B07"),
 ):
+    """Set a property of the UB object in a given hkl object.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        property: the property of the UB object to set
+        target_value: the miller indices to set them to
+        store: accessor to the hkl object
+        collection: collection within which the hkl object resides
+
+    The property to be set must be a valid vector property.
+    """
     if property not in VECTOR_PROPERTIES:
         raise InvalidPropertyError()
 
diff --git a/src/diffcalc_API/server.py b/src/diffcalc_API/server.py
index f6fa7c3..c6e2039 100644
--- a/src/diffcalc_API/server.py
+++ b/src/diffcalc_API/server.py
@@ -1,3 +1,4 @@
+"""Startup script for the API server."""
 import logging
 import traceback
 from typing import Optional
@@ -33,6 +34,7 @@
 
 @app.exception_handler(DiffcalcException)
 async def diffcalc_exception_handler(request: Request, exc: DiffcalcException):
+    """Handle diffcalc-core exceptions, which mostly happen on bad requests."""
     tb = traceback.format_exc()
     logger.warning(f"Diffcalc Exception caught by middleware: {tb}")
 
@@ -44,8 +46,9 @@ async def diffcalc_exception_handler(request: Request, exc: DiffcalcException):
 
 @app.exception_handler(DiffcalcAPIException)
 async def http_exception_handler(request: Request, exc: DiffcalcAPIException):
+    """Handle exceptions raised due to bad request parameters/queries and bodies."""
     tb = traceback.format_exc()
-    logger.error(f"Diffcalc API Exception caught by middleware: {tb}")
+    logger.warning(f"Diffcalc API Exception caught by middleware: {tb}")
 
     return responses.JSONResponse(
         status_code=exc.status_code,
@@ -55,6 +58,10 @@ async def http_exception_handler(request: Request, exc: DiffcalcAPIException):
 
 @app.middleware("http")
 async def server_exceptions_middleware(request: Request, call_next):
+    """Handle all other exceptions.
+
+    These are undocumented, and if raised should be investigated immediately.
+    """
     try:
         return await call_next(request)
     except Exception as e:
@@ -78,6 +85,7 @@ async def create_hkl_object(
     store=Depends(get_store),
     collection: Optional[str] = Query(default=None, example="B07"),
 ):
+    """Create the hkl object which will be persisted."""
     await store.create(name, collection)
     return InfoResponse(message=f"crystal {name} in collection {collection} created")
 
@@ -88,6 +96,7 @@ async def delete_hkl_object(
     store=Depends(get_store),
     collection: Optional[str] = Query(default=None, example="B07"),
 ):
+    """Delete the hkl object from the store i.e. persistence layer."""
     await store.delete(name, collection)
 
     return InfoResponse(message=f"crystal {name} in collection {collection} deleted")
diff --git a/src/diffcalc_API/services/__init__.py b/src/diffcalc_API/services/__init__.py
index 2350aac..5e5f3bb 100644
--- a/src/diffcalc_API/services/__init__.py
+++ b/src/diffcalc_API/services/__init__.py
@@ -1,3 +1,5 @@
+"""Defines business logic for all endpoints, separately from the API logic."""
+
 from diffcalc_API.services import constraints, hkl, ub
 
 __all__ = ["ub", "hkl", "constraints"]
diff --git a/src/diffcalc_API/services/constraints.py b/src/diffcalc_API/services/constraints.py
index 0c85e90..82e659c 100644
--- a/src/diffcalc_API/services/constraints.py
+++ b/src/diffcalc_API/services/constraints.py
@@ -1,3 +1,5 @@
+"""Defines business logic for handling requests from constraints endpoints."""
+
 from typing import Dict, Optional
 
 from diffcalc.hkl.constraints import Constraints
@@ -10,6 +12,16 @@
 async def get_constraints(
     name: str, store: HklCalcStore, collection: Optional[str]
 ) -> str:
+    """Get the status of the constraints object in the given hkl object.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        store: accessor to the hkl object
+        collection: collection within which the hkl object resides
+
+    Returns:
+        a string with the current state of the constraints
+    """
     hklcalc = await store.load(name, collection)
     return str(hklcalc.constraints)
 
@@ -20,6 +32,15 @@ async def set_constraints(
     store: HklCalcStore,
     collection: Optional[str],
 ) -> None:
+    """Set the constraints in the constraints object in the given hkl object.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        constraints: dictionary with the constraints to set
+        store: accessor to the hkl object
+        collection: collection within which the hkl object resides
+
+    """
     hklcalc = await store.load(name, collection)
 
     boolean_constraints = set(constraints.keys()).intersection(
@@ -39,6 +60,15 @@ async def remove_constraint(
     store: HklCalcStore,
     collection: Optional[str],
 ) -> None:
+    """Remove a constraint in the constraints object in the given hkl object.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        property: the constraint to remove
+        store: accessor to the hkl object
+        collection: collection within which the hkl object resides
+
+    """
     hklcalc = await store.load(name, collection)
 
     if property not in ALL_CONSTRAINTS:
@@ -56,6 +86,16 @@ async def set_constraint(
     store: HklCalcStore,
     collection: Optional[str],
 ) -> None:
+    """Set a constraint in the constraints object in the given hkl object.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        property: the constraint to set
+        value: the value of the constraint to set to
+        store: accessor to the hkl object
+        collection: collection within which the hkl object resides
+
+    """
     hklcalc = await store.load(name, collection)
 
     if property not in ALL_CONSTRAINTS:
diff --git a/src/diffcalc_API/services/hkl.py b/src/diffcalc_API/services/hkl.py
index 682fe2a..46c2e9b 100644
--- a/src/diffcalc_API/services/hkl.py
+++ b/src/diffcalc_API/services/hkl.py
@@ -1,3 +1,5 @@
+"""Defines business logic for handling requests from hkl endpoints."""
+
 from itertools import product
 from typing import Dict, List, Optional, Tuple, Union
 
@@ -18,6 +20,19 @@ async def lab_position_from_miller_indices(
     store: HklCalcStore,
     collection: Optional[str],
 ) -> List[Dict[str, float]]:
+    """Convert miller indices to a list of diffractometer positions.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        miller_indices: miller indices to be converted
+        wavelength: wavelength of light used in the experiment
+        solution_constraints: object containings angles to constrain solutions by
+        store: accessor to the hkl object
+        collection: collection within which the hkl object resides
+
+    Returns:
+        A list of all possible diffractometer positions
+    """
     hklcalc = await store.load(name, collection)
 
     if all([idx == 0 for idx in miller_indices]):
@@ -36,6 +51,18 @@ async def miller_indices_from_lab_position(
     store: HklCalcStore,
     collection: Optional[str],
 ) -> HklModel:
+    """Convert a diffractometer position to a set of miller indices.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        pos: object containing diffractometer position to be converted.
+        wavelength: wavelength of light used in the experiment
+        store: accessor to the hkl object.
+        collection: collection within which the hkl object resides.
+
+    Returns:
+        Object containing converted lab position
+    """
     hklcalc = await store.load(name, collection)
     hkl = np.round(hklcalc.get_hkl(Position(**pos.dict()), wavelength), 16)
     return HklModel(h=hkl[0], k=hkl[1], l=hkl[2])
@@ -51,6 +78,22 @@ async def scan_hkl(
     store: HklCalcStore,
     collection: Optional[str],
 ) -> Dict[str, List[Dict[str, float]]]:
+    """Retrieve possible diffractometer positions for a range of miller indices.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        start: miller indices to start at
+        stop: miller indices to stop at
+        inc: miller indices to increment by
+        wavelength: wavelength of light used in the experiment
+        solution_constraints: object containings angles to constrain solutions by
+        store: accessor to the hkl object.
+        collection: collection within which the hkl object resides.
+
+    Returns:
+        Dictionary of each set of miller indices and their possible diffractometer
+        positions.
+    """
     hklcalc = await store.load(name, collection)
 
     if (len(start) != 3) or (len(stop) != 3) or (len(inc) != 3):
@@ -89,6 +132,22 @@ async def scan_wavelength(
     store: HklCalcStore,
     collection: Optional[str],
 ) -> Dict[str, List[Dict[str, float]]]:
+    """Retrieve possible diffractometer positions for a range of wavelengths.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        start: wavelength to start at
+        stop: wavelength to stop at
+        inc: wavelength to increment by
+        hkl: desired miller indices to use for the experiment
+        solution_constraints: object containings angles to constrain solutions by
+        store: accessor to the hkl object.
+        collection: collection within which the hkl object resides.
+
+    Returns:
+        Dictionary of each wavelength and the corresponding possible diffractometer
+        positions.
+    """
     hklcalc = await store.load(name, collection)
 
     if len(np.arange(start, stop + inc, inc)) == 0:
@@ -118,6 +177,24 @@ async def scan_constraint(
     store: HklCalcStore,
     collection: Optional[str],
 ) -> Dict[str, List[Dict[str, float]]]:
+    """Retrieve possible diffractometer positions while scanning across a constraint.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        constraint: the name of the constraint to use.
+        start: constraint to start at
+        stop: constraint to stop at
+        inc: constraint to increment by
+        hkl: desired miller indices to use for the experiment
+        wavelength: wavelength of light used in the experiment
+        solution_constraints: object containings angles to constrain solutions by
+        store: accessor to the hkl object.
+        collection: collection within which the hkl object resides.
+
+    Returns:
+        Dictionary of each constraint value and the corresponding possible
+        diffractometer positions.
+    """
     hklcalc = await store.load(name, collection)
 
     if len(np.arange(start, stop + inc, inc)) == 0:
@@ -135,6 +212,19 @@ async def scan_constraint(
 
 
 def generate_axis(start: float, stop: float, inc: float):
+    """Attempt to generate a numpy range between values.
+
+    Args:
+        start: value to start at
+        stop: value to stop at
+        inc: value to increment by
+
+    Returns:
+        a numpy range.
+
+    Throws an error if the numpy range is null, most likely due to non-logical
+    range like 0->1 in increments of a negative number.
+    """
     if len(np.arange(start, stop + inc, inc)) == 0:
         raise InvalidScanBoundsError(start, stop, inc)
 
@@ -145,6 +235,16 @@ def combine_lab_position_results(
     positions: List[Tuple[Position, Dict[str, float]]],
     solution_constraints: SolutionConstraints,
 ) -> List[Dict[str, float]]:
+    """Combine physical and virtual angles.
+
+    Args:
+        positions: list of each set of physical and virtual angles.
+        solution_constraints: object containings angles to constrain solutions by
+
+    Returns:
+        a list of angles, combined together into one dictionary.
+
+    """
     axes = solution_constraints.axes
     low_bound = solution_constraints.low_bound
     high_bound = solution_constraints.high_bound
@@ -176,6 +276,25 @@ async def calculate_ub(
     tag2: Optional[str],
     idx2: Optional[int],
 ) -> List[List[float]]:
+    """Calculate the UB matrix.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        store: accessor to the hkl object.
+        collection: collection within which the hkl object resides.
+        tag1: the tag of the first reference object.
+        idx1: the index of the first reference object.
+        tag2: the tag of the second reference object.
+        idx2: the index of the second reference object.
+
+    For each reference object, only a tag or index needs to be given. If none are
+    provided, diffcalc-core tries to work it out from the available reference
+    objects.
+
+    Returns:
+        a list of angles, combined together into one dictionary.
+
+    """
     hklcalc = await store.load(name, collection)
 
     first_retrieve: Optional[Union[str, int]] = tag1 if tag1 else idx1
diff --git a/src/diffcalc_API/services/ub.py b/src/diffcalc_API/services/ub.py
index 9e55d33..7a30285 100644
--- a/src/diffcalc_API/services/ub.py
+++ b/src/diffcalc_API/services/ub.py
@@ -1,3 +1,5 @@
+"""Business logic for handling requests from ub endpoints."""
+
 from typing import Optional, Union
 
 from diffcalc.hkl.geometry import Position
@@ -15,6 +17,16 @@
 
 
 async def get_ub(name: str, store: HklCalcStore, collection: Optional[str]) -> str:
+    """Get the status of the UB object in the hkl object.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        store: accessor to the hkl object
+        collection: collection within which the hkl object resides
+
+    Returns:
+        a string with the current state of the UB object
+    """
     hklcalc = await store.load(name, collection)
 
     return str(hklcalc.ubcalc)
@@ -27,6 +39,16 @@ async def add_reflection(
     collection: Optional[str],
     tag: Optional[str],
 ) -> None:
+    """Add reflection to the UB object in the hkl object.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        params: detail about the reflection object to be added
+        store: accessor to the hkl object
+        collection: collection within which the hkl object resides
+        tag: optional tag to attribute to the new reflection
+
+    """
     hklcalc = await store.load(name, collection)
 
     hklcalc.ubcalc.add_reflection(
@@ -47,6 +69,18 @@ async def edit_reflection(
     tag: Optional[str],
     idx: Optional[int],
 ) -> None:
+    """Modify reflection in the UB object in the hkl object.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        params: detail describing what the reflection should be edited to
+        store: accessor to the hkl object
+        collection: collection within which the hkl object resides
+        tag: optional tag to retrieve the reflection by
+        idx: optional index to retrieve the reflection by
+
+    Exactly one tag or index must be provided.
+    """
     hklcalc = await store.load(name, collection)
 
     retrieve: Union[int, str] = (
@@ -85,6 +119,17 @@ async def delete_reflection(
     tag: Optional[str],
     idx: Optional[int],
 ) -> None:
+    """Delete reflection in the UB object in the hkl object.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        store: accessor to the hkl object
+        collection: collection within which the hkl object resides
+        tag: optional tag to retrieve the reflection by
+        idx: optional index to retrieve the reflection by
+
+    Exactly one tag or index must be provided.
+    """
     hklcalc = await store.load(name, collection)
 
     retrieve: Union[str, int] = (
@@ -108,6 +153,16 @@ async def add_orientation(
     collection: Optional[str],
     tag: Optional[str],
 ) -> None:
+    """Add orientation to the UB object in the hkl object.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        params: detail about the orientation object to be added
+        store: accessor to the hkl object
+        collection: collection within which the hkl object resides
+        tag: optional tag to attribute to the new orientation
+
+    """
     hklcalc = await store.load(name, collection)
 
     position = Position(**params.position.dict()) if params.position else None
@@ -129,6 +184,18 @@ async def edit_orientation(
     tag: Optional[str],
     idx: Optional[int],
 ) -> None:
+    """Modify orientation in the UB object in the hkl object.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        params: detail describing what the orientation should be edited to
+        store: accessor to the hkl object
+        collection: collection within which the hkl object resides
+        tag: optional tag to retrieve the orientation by
+        idx: optional index to retrieve the orientation by
+
+    Exactly one tag or index must be provided.
+    """
     hklcalc = await store.load(name, collection)
 
     retrieve: Union[int, str] = (
@@ -167,6 +234,17 @@ async def delete_orientation(
     tag: Optional[str],
     idx: Optional[int],
 ) -> None:
+    """Delete orientation in the UB object in a given hkl object.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        store: accessor to the hkl object
+        collection: collection within which the hkl object resides
+        tag: optional tag to retrieve the orientation by
+        idx: optional index to retrieve the orientation by
+
+    Exactly one tag or index must be provided.
+    """
     hklcalc = await store.load(name, collection)
 
     retrieve: Union[int, str] = (
@@ -186,6 +264,15 @@ async def delete_orientation(
 async def set_lattice(
     name: str, params: SetLatticeParams, store: HklCalcStore, collection: Optional[str]
 ) -> None:
+    """Set the Crystal parameters in the UB object in a given hkl object.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        params: the parameters to use to set the lattice
+        store: accessor to the hkl object
+        collection: collection within which the hkl object resides
+
+    """
     hklcalc = await store.load(name, collection)
 
     input_params = params.dict()
@@ -204,6 +291,17 @@ async def modify_property(
     store: HklCalcStore,
     collection: Optional[str],
 ) -> None:
+    """Set a property of the UB object in a given hkl object.
+
+    Args:
+        name: the name of the hkl object to access within the store
+        property: the property of the UB object to set
+        target_value: the miller indices to set them to
+        store: accessor to the hkl object
+        collection: collection within which the hkl object resides
+
+    The property to be set must be a valid vector property.
+    """
     hklcalc = await store.load(name, collection)
 
     setattr(hklcalc.ubcalc, property, tuple(target_value.dict().values()))
diff --git a/src/diffcalc_API/stores/__init__.py b/src/diffcalc_API/stores/__init__.py
index b2ba863..8433adf 100644
--- a/src/diffcalc_API/stores/__init__.py
+++ b/src/diffcalc_API/stores/__init__.py
@@ -1,3 +1,15 @@
+"""Defines interactions with a persistence layer.
+
+Diffraction calculations can only be performed on HklCalculation objects,
+which must be persisted.
+
+diffcalc_API.stores.pickling defines a class for persisting them on-file,
+diffcalc_API.stores.mongo defines a class for persisting them on mongodb.
+
+This can be extended to any database or persistence model, so long as it follows
+the protocol defined in diffcalc_API.stores.protocol.
+"""
+
 from . import pickling, protocol
 
 __all__ = ["pickling", "protocol"]
diff --git a/src/diffcalc_API/stores/mongo.py b/src/diffcalc_API/stores/mongo.py
index 4960429..264d933 100644
--- a/src/diffcalc_API/stores/mongo.py
+++ b/src/diffcalc_API/stores/mongo.py
@@ -1,3 +1,5 @@
+"""Defines interactions with mongo persistence layer."""
+
 from typing import Any, Dict, Optional
 
 import numpy as np
@@ -16,12 +18,21 @@
 
 
 class ErrorCodes(ErrorCodesBase):
+    """Persistence error codes.
+
+    This class defines all error codes which can be raised in the retrieval or storage
+    of HklCalculation objects.
+    """
+
     OVERWRITE_ERROR = 405
     DOCUMENT_NOT_FOUND_ERROR = 404
 
 
 class OverwriteError(DiffcalcAPIException):
+    """Thrown if a HklCalculation object is created with a non-unique name."""
+
     def __init__(self, name: str) -> None:
+        """Set detail and status code of the error."""
         self.detail = (
             f"Document already exists for crystal {name}!"
             f"\nEither delete via DELETE request to this URL "
@@ -31,20 +42,35 @@ def __init__(self, name: str) -> None:
 
 
 class DocumentNotFoundError(DiffcalcAPIException):
+    """Thrown if the store cannot retrieve a HklCalculation object."""
+
     def __init__(self, name: str, action: str) -> None:
+        """Set detail and status code of the error."""
         self.detail = f"Document for crystal {name} not found! Cannot {action}."
         self.status_code = ErrorCodes.DOCUMENT_NOT_FOUND_ERROR
 
 
 class MongoHklCalcStore:
+    """Class to use mongo db as a persistence layer for the API."""
+
     def __init__(
         self,
     ) -> None:
+        """Set error codes that could be thrown during method excecution.
+
+        Purely for documentation purposes.
+        """
         self.responses = {
             code: ALL_RESPONSES[code] for code in np.unique(ErrorCodes.all_codes())
         }
 
     async def create(self, name: str, collection: Optional[str]) -> None:
+        """Create a HklCalculation object.
+
+        Args:
+            name: the unique name to attribute to the object
+            collection: the collection to store it inside.
+        """
         coll: Collection = database[collection if collection else "default"]
 
         if await coll.find_one({"ubcalc.name": name}):
@@ -57,6 +83,12 @@ async def create(self, name: str, collection: Optional[str]) -> None:
         await coll.insert_one(hkl.asdict)
 
     async def delete(self, name: str, collection: Optional[str]) -> None:
+        """Delete a HklCalculation object.
+
+        Args:
+            name: the name by which to retrieve the object
+            collection: the collection inside which it is stored.
+        """
         coll: Collection = database[collection if collection else "default"]
         result: DeleteResult = await coll.delete_one({"ubcalc.name": name})
         if result.deleted_count == 0:
@@ -65,10 +97,25 @@ async def delete(self, name: str, collection: Optional[str]) -> None:
     async def save(
         self, name: str, hkl: HklCalculation, collection: Optional[str]
     ) -> None:
+        """Update a HklCalculation object.
+
+        Args:
+            name: the name by which to retrieve the object
+            collection: the collection inside which it is stored.
+        """
         coll: Collection = database[collection if collection else "default"]
         await coll.find_one_and_update({"ubcalc.name": name}, {"$set": hkl.asdict})
 
     async def load(self, name: str, collection: Optional[str]) -> HklCalculation:
+        """Load a HklCalculation object.
+
+        Args:
+            name: the name by which to retrieve the object
+            collection: the collection inside which it is stored.
+
+        Returns:
+            The HklCalculation object.
+        """
         coll: Collection = database[collection if collection else "default"]
         hkl_json: Optional[Dict[str, Any]] = await coll.find_one({"ubcalc.name": name})
         if not hkl_json:
diff --git a/src/diffcalc_API/stores/pickling.py b/src/diffcalc_API/stores/pickling.py
index b653395..e91ea4c 100644
--- a/src/diffcalc_API/stores/pickling.py
+++ b/src/diffcalc_API/stores/pickling.py
@@ -1,3 +1,5 @@
+"""Defines interactions with a file system persistence layer."""
+
 import pickle
 from pathlib import Path
 from typing import Optional
@@ -16,12 +18,17 @@
 
 
 class ErrorCodes(ErrorCodesBase):
+    """Codes which can be raised in the retrieval/storage of HklCalculation objects."""
+
     OVERWRITE_ERROR = 405
     FILE_NOT_FOUND_ERROR = 404
 
 
 class OverwriteError(DiffcalcAPIException):
+    """Thrown if a HklCalculation object is created with a non-unique name."""
+
     def __init__(self, name):
+        """Set detail and status code."""
         self.detail = (
             f"File already exists for crystal {name}!"
             f"\nEither delete via DELETE request to this URL "
@@ -31,7 +38,10 @@ def __init__(self, name):
 
 
 class FileNotFoundError(DiffcalcAPIException):
+    """Thrown if the store cannot retrieve a HklCalculation object."""
+
     def __init__(self, name):
+        """Set detail and status code."""
         self.detail = (
             f"File for crystal {name} not found."
             f"\nYou need to post to"
@@ -42,14 +52,26 @@ def __init__(self, name):
 
 
 class PicklingHklCalcStore:
+    """Class to use the file system as a persistence layer for the API."""
+
     _root_directory: Path = Path(SAVE_PICKLES_FOLDER)
 
     def __init__(self) -> None:
+        """Set error codes that could be thrown during method excecution.
+
+        Purely for documentation purposes.
+        """
         self.responses = {
             code: ALL_RESPONSES[code] for code in np.unique(ErrorCodes.all_codes())
         }
 
     async def create(self, name: str, collection: Optional[str]) -> None:
+        """Create a HklCalculation object.
+
+        Args:
+            name: the unique name to attribute to the object
+            collection: the collection to store it inside.
+        """
         pickled_file = (
             Path(SAVE_PICKLES_FOLDER) / (collection if collection else "default") / name
         )
@@ -67,6 +89,12 @@ async def create(self, name: str, collection: Optional[str]) -> None:
         await self.save(name, hkl, collection)
 
     async def delete(self, name: str, collection: Optional[str]) -> None:
+        """Delete a HklCalculation object.
+
+        Args:
+            name: the name by which to retrieve the object
+            collection: the collection inside which it is stored.
+        """
         pickled_file = (
             Path(SAVE_PICKLES_FOLDER) / (collection if collection else "default") / name
         )
@@ -78,6 +106,12 @@ async def delete(self, name: str, collection: Optional[str]) -> None:
     async def save(
         self, name: str, calc: HklCalculation, collection: Optional[str]
     ) -> None:
+        """Update a HklCalculation object.
+
+        Args:
+            name: the name by which to retrieve the object
+            collection: the collection inside which it is stored.
+        """
         file_path = (
             self._root_directory / (collection if collection else "default") / name
         )
@@ -85,6 +119,15 @@ async def save(
             pickle.dump(obj=calc, file=stream)
 
     async def load(self, name: str, collection: Optional[str]) -> HklCalculation:
+        """Load a HklCalculation object.
+
+        Args:
+            name: the name by which to retrieve the object
+            collection: the collection inside which it is stored.
+
+        Returns:
+            The HklCalculation object.
+        """
         file_path = (
             self._root_directory / (collection if collection else "default") / name
         )
diff --git a/src/diffcalc_API/stores/protocol.py b/src/diffcalc_API/stores/protocol.py
index 751c1b2..3cc9979 100644
--- a/src/diffcalc_API/stores/protocol.py
+++ b/src/diffcalc_API/stores/protocol.py
@@ -1,3 +1,9 @@
+"""Protocol for HklCalculation persistence.
+
+Defines how HklCalculation objects ought to be accessed in the API, and what methods
+must be provided by persistence methods for API services to access them.
+"""
+
 from importlib import import_module
 from typing import Any, Dict, Optional, Protocol, Union
 
@@ -5,24 +11,26 @@
 
 
 class HklCalcStore(Protocol):
-    """
-    Protocol, or interface, for interacting with the Hkl object.
-    """
+    """Protocol for interacting with the HklCalculation object."""
 
     responses: Dict[Union[int, str], Dict[str, Any]]
 
     async def create(self, name: str, collection: Optional[str]) -> None:
+        """Create a HklCalculation object."""
         ...
 
     async def delete(self, name: str, collection: Optional[str]) -> None:
+        """Delete a HklCalculation object."""
         ...
 
     async def save(
         self, name: str, calc: HklCalculation, collection: Optional[str]
     ) -> None:
+        """Save a HklCalculation object."""
         ...
 
     async def load(self, name: str, collection: Optional[str]) -> HklCalculation:
+        """Load a HklCalculation object."""
         ...
 
 
@@ -30,12 +38,14 @@ async def load(self, name: str, collection: Optional[str]) -> HklCalculation:
 
 
 def get_store() -> HklCalcStore:
+    """Retrieve the class which handles HklCalculation objects."""
     if STORE is None:
         raise ValueError()
     return STORE
 
 
 def setup_store(store_location: str, *args) -> None:
+    """Allow the server to select which store to use."""
     global STORE
     path, clsname = store_location.rsplit(".", 1)
     STORE = getattr(import_module(path), clsname)(*args)
diff --git a/tests/test_create_delete.py b/tests/test_create_delete.py
new file mode 100644
index 0000000..e6a5635
--- /dev/null
+++ b/tests/test_create_delete.py
@@ -0,0 +1,38 @@
+import pytest
+from diffcalc.hkl.calc import HklCalculation
+from diffcalc.hkl.constraints import Constraints
+from diffcalc.ub.calc import UBCalculation
+from fastapi.testclient import TestClient
+
+from diffcalc_API.server import app
+from diffcalc_API.stores.protocol import HklCalcStore, get_store
+from tests.conftest import FakeHklCalcStore
+
+dummy_hkl = HklCalculation(UBCalculation(name="dummy"), Constraints())
+
+
+def dummy_get_store() -> HklCalcStore:
+    return FakeHklCalcStore(dummy_hkl)
+
+
+@pytest.fixture(scope="session")
+def client() -> TestClient:
+    app.dependency_overrides[get_store] = dummy_get_store
+
+    return TestClient(app)
+
+
+def test_create(client: TestClient):
+    response = client.post(
+        "/test?collection=B07",
+    )
+
+    assert response.status_code == 200
+
+
+def test_delete(client: TestClient):
+    response = client.delete(
+        "/test?collection=B07",
+    )
+
+    assert response.status_code == 200